PDB entry 1q9q
View 1q9q on RCSB PDB site
Description: S25-2- a(2-8)-a(2-4)Kdo trisaccharide complex
Class: immune system
Keywords: antigen-binding fragment, Fab, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, Kdo, complex
Deposited on
2003-08-25, released
2004-01-27
The last revision prior to the SCOP 1.75 freeze date was dated
2004-01-27, with a file datestamp of
2007-06-28.
Experiment type: XRAY
Resolution: 1.49 Å
R-factor: 0.2
AEROSPACI score: 0.71
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: S25-2 Fab (IgG1k) light chain
Species: MUS MUSCULUS
Domains in SCOP 1.75: d1q9qa1, d1q9qa2 - Chain 'B':
Compound: S25-2 Fab (IgG1k) heavy chain
Species: MUS MUSCULUS
Domains in SCOP 1.75: d1q9qb1, d1q9qb2 - Heterogens: MG, ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1q9qA (A:)
divmsqspsslavsagekvtmsckssqsllnsrtrknylawyqqkpgqspklliywastr
esgvpdrftgsgsgtdftltitsvqaedlavyyckqsynlrtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1q9qB (B:)
evklvesggglvqsggslrlscatsgftftdyymswvrqppgkalewlgfirnkangytt
eyspsvkgrftisrdnsqsilylqmntlraedsatyycardhdgyyerfsywgqgtlvtv
saakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlq
sdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr