PDB entry 1q8f

View 1q8f on RCSB PDB site
Description: Crystal Structure of the E.coli pyrimidine nucleoside hydrolase yeiK
Class: hydrolase
Keywords: open alpha-beta structure, NH-fold, HYDROLASE
Deposited on 2003-08-21, released 2004-05-11
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.153
AEROSPACI score: 0.58 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyrimidine nucleoside hydrolase
    Species: Escherichia coli [TaxId:562]
    Gene: YEIK
    Database cross-references and differences (RAF-indexed):
    • Uniprot P33022
      • cloning artifact (83)
    Domains in SCOPe 2.05: d1q8fa_
  • Chain 'B':
    Compound: Pyrimidine nucleoside hydrolase
    Species: Escherichia coli [TaxId:562]
    Gene: YEIK
    Database cross-references and differences (RAF-indexed):
    • Uniprot P33022
      • cloning artifact (83)
    Domains in SCOPe 2.05: d1q8fb_
  • Chain 'C':
    Compound: Pyrimidine nucleoside hydrolase
    Species: Escherichia coli [TaxId:562]
    Gene: YEIK
    Database cross-references and differences (RAF-indexed):
    • Uniprot P33022
      • cloning artifact (83)
    Domains in SCOPe 2.05: d1q8fc_
  • Chain 'D':
    Compound: Pyrimidine nucleoside hydrolase
    Species: Escherichia coli [TaxId:562]
    Gene: YEIK
    Database cross-references and differences (RAF-indexed):
    • Uniprot P33022
      • cloning artifact (83)
    Domains in SCOPe 2.05: d1q8fd_
  • Heterogens: CA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1q8fA (A:)
mekrkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqklein
vpvyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgdit
lvpvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvfts
gvplvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhd
atcigylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwg
lveecvrgyikth

    Sequence, based on observed residues (ATOM records): (download) 
    >1q8fA (A:)
krkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinvp
vyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgditlv
pvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsgv
plvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhdat
cigylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwglv
eecvrgyi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1q8fB (B:)
mekrkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqklein
vpvyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgdit
lvpvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvfts
gvplvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhd
atcigylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwg
lveecvrgyikth

    Sequence, based on observed residues (ATOM records): (download) 
    >1q8fB (B:)
krkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinvp
vyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgditlv
pvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsgv
plvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhdat
cigylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwglv
eecvrgyi

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1q8fC (C:)
mekrkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqklein
vpvyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgdit
lvpvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvfts
gvplvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhd
atcigylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwg
lveecvrgyikth

    Sequence, based on observed residues (ATOM records): (download) 
    >1q8fC (C:)
krkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinvp
vyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgditlv
pvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsgv
plvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhdat
cigylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwglv
eecvrgyi

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1q8fD (D:)
mekrkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqklein
vpvyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgdit
lvpvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvfts
gvplvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhd
atcigylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwg
lveecvrgyikth

    Sequence, based on observed residues (ATOM records): (download) 
    >1q8fD (D:)
krkiildcdpghddaiaimmaakhpaidllgitivagnqtldktlinglnvcqkleinvp
vyagmpqpimrqqivadnihgdtgldgpvfepltrqaesthavkyiidtlmasdgditlv
pvgplsniavamrmqpailpkireivlmggaygtgnftpsaefnifadpeaarvvftsgv
plvmmgldltnqtvctpdviarmeraggpagelfsdimnftlktqfenyglaggpvhdat
cigylinpdgiktqemyvevdvnsgpcygrtvcdelgvlgkpantkvgitidtdwfwglv
eecvrgyi