PDB entry 1q5w

View 1q5w on RCSB PDB site
Description: Ubiquitin Recognition by Npl4 Zinc-Fingers
Class: protein binding
Keywords: Ubiquitin, Protein-Protein complex, Zinc-finger, Rubredoxin knuckle, NZF domain, PROTEIN BINDING
Deposited on 2003-08-11, released 2004-03-30
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: NMR
Resolution: N/A
R-factor: N/A
AEROSPACI score: 0.03 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: homolog of yeast nuclear protein localization 4
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Npl4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9ES54 (2-30)
      • cloning artifact (0-1)
    Domains in SCOPe 2.07: d1q5wa1, d1q5wa2
  • Chain 'B':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: (UBA52 OR UBCEP2) AND UBB AND UBC AND (UBA80 OR UBCEP1 OR RPS27A)
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1q5wb_
  • Heterogens: ZN

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1q5wA (A:)
    gstsamwacqhctfmnqpgtghcemcslprt
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1q5wB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg