PDB entry 1q32

View 1q32 on RCSB PDB site
Description: Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase
Class: replication,transcription,hydrolase
Keywords: Tyrosyl-DNA Phosphodiesterase; TDP; DNA repair, REPLICATION, TRANSCRIPTION, HYDROLASE, REPLICATION,TRANSCRIPTION,HYDROLASE
Deposited on 2003-07-28, released 2004-09-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2008-06-10, with a file datestamp of 2009-02-19.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: 0.214
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tyrosyl-DNA phosphodiesterase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: TDP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q32a1, d1q32a2
  • Chain 'B':
    Compound: tyrosyl-DNA phosphodiesterase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: TDP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q32b1, d1q32b2
  • Chain 'C':
    Compound: tyrosyl-DNA phosphodiesterase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: TDP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q32c1, d1q32c2
  • Chain 'D':
    Compound: tyrosyl-DNA phosphodiesterase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: TDP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q32d1, d1q32d2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1q32A (A:)
msretnfngtkrkrsdvaekvaqrwksvrysaemenmapvnsnndsddcvivseskiidl
tnqeqdlserietndtakgavfklmksdfyeredfmgevedmitlkdifgtetlkrsilf
sfqyeldfllrqfhqnvenitivgqkgtimpiearamdatlavilkkvklieitmppfas
hhtkliinfydngeckiflpsnnftsmetnlpqqvcwcspllkigkeglpvpfkrsliey
lnsyhlkdidelitksveevnfaplselefvystpskfqssgllsfynkleklsagtsas
dtakhylcqtssigtslsrardenlwthlmiplftgimsppakdtagrkkaeilptnsli
neysqrkikpyiifpteqefvtsplkwsssgwfhfqylqkksyyemlrnkfkvfykqdpa
mvtrrrgttpahskfymhcatnsagpcdasqvfkelewclytsanlsqtawgtvsrkprn
yeagvlyhsrrlantrkvtcrtftrdrrgcagnpthvavpftlpvipydlaedecfclar
hend

    Sequence, based on observed residues (ATOM records): (download) 
    >1q32A (A:)
gavfklmksdfyeredmitlkdifgtetlkrsilfsfqyeldfllrqfhqnvenitivgq
kgtimpiearamdatlavilkkvklieitmppfashhtkliinfydngeckiflpsnnft
smetnlpqqvcwcspllkigkeglpvpfkrslieylnsyhlkdidelitksveevnfapl
selefvystpskfqssgllsfynkleklsdtakhylcqtssigtslsrardenlwthlmi
plftgimsppilptnslineysqrkikpyiifpteqefvtsplkwsssgwfhfqylqkks
yyemlrnkfkvfykqdpamvtrrrgttpahskfymhcatnsqvfkelewclytsanlsqt
awgtvsrkprnyeagvlyhsrrlrkvtcrtftrdpthvavpftlpvipydlaedecfcl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1q32B (B:)
msretnfngtkrkrsdvaekvaqrwksvrysaemenmapvnsnndsddcvivseskiidl
tnqeqdlserietndtakgavfklmksdfyeredfmgevedmitlkdifgtetlkrsilf
sfqyeldfllrqfhqnvenitivgqkgtimpiearamdatlavilkkvklieitmppfas
hhtkliinfydngeckiflpsnnftsmetnlpqqvcwcspllkigkeglpvpfkrsliey
lnsyhlkdidelitksveevnfaplselefvystpskfqssgllsfynkleklsagtsas
dtakhylcqtssigtslsrardenlwthlmiplftgimsppakdtagrkkaeilptnsli
neysqrkikpyiifpteqefvtsplkwsssgwfhfqylqkksyyemlrnkfkvfykqdpa
mvtrrrgttpahskfymhcatnsagpcdasqvfkelewclytsanlsqtawgtvsrkprn
yeagvlyhsrrlantrkvtcrtftrdrrgcagnpthvavpftlpvipydlaedecfclar
hend

    Sequence, based on observed residues (ATOM records): (download) 
    >1q32B (B:)
gavfklmksdfyermitlkdifgtetlkrsilfsfqyeldfllrqfhqnvenitivgqkg
timpiearamdatlavilkkvklieitmppfashhtkliinfydngeckiflpsnnftsm
etnlpqqvcwcspllkigkeglpvpfkrslieylnsyhlkdidelitksveevnfaplse
lefvystpskfqssgllsfynkleklsdtakhylcqtssigtslsrardenlwthlmipl
ftgimsilptnslineysqrkikpyiifpteqefvtsplkwsssgwfhfqylqkksyyem
lrnkfkvfykqdpamvtrrrgttpahskfymhcatasqvfkelewclytsanlsqtawgt
vsrkprnyeagvlyhsrrlantrkvtcrtftrdpthvavpftlpvipydlaedecfclar

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1q32C (C:)
msretnfngtkrkrsdvaekvaqrwksvrysaemenmapvnsnndsddcvivseskiidl
tnqeqdlserietndtakgavfklmksdfyeredfmgevedmitlkdifgtetlkrsilf
sfqyeldfllrqfhqnvenitivgqkgtimpiearamdatlavilkkvklieitmppfas
hhtkliinfydngeckiflpsnnftsmetnlpqqvcwcspllkigkeglpvpfkrsliey
lnsyhlkdidelitksveevnfaplselefvystpskfqssgllsfynkleklsagtsas
dtakhylcqtssigtslsrardenlwthlmiplftgimsppakdtagrkkaeilptnsli
neysqrkikpyiifpteqefvtsplkwsssgwfhfqylqkksyyemlrnkfkvfykqdpa
mvtrrrgttpahskfymhcatnsagpcdasqvfkelewclytsanlsqtawgtvsrkprn
yeagvlyhsrrlantrkvtcrtftrdrrgcagnpthvavpftlpvipydlaedecfclar
hend

    Sequence, based on observed residues (ATOM records): (download) 
    >1q32C (C:)
gavfklmksdfyeedmitlkdifgtetlkrsilfsfqyeldfllrqfhqnvenitivgqk
gtimpiearamdatlavilkkvklieitmppfashhtkliinfydngeckiflpsnnfts
metnlpqqvcwcspllkigkeglpvpfkrslieylnsyhlkdidelitksveevnfapls
elefvystpskfqssgllsfynklekltakhylcqtssigtslsrardenlwthlmiplf
tgimspilptnslineysqrkikpyiifpteqefvtsplkwsssgwfhfqylqkksyyem
lrnkfkvfykqdpamvtrrrgttpahskfymhcatfkelewclytsanlsqtawgtvsrk
prnyeagvlyhsrrlantrkvtcrtftrdpthvavpftlpvipydlaedecfclarh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1q32D (D:)
msretnfngtkrkrsdvaekvaqrwksvrysaemenmapvnsnndsddcvivseskiidl
tnqeqdlserietndtakgavfklmksdfyeredfmgevedmitlkdifgtetlkrsilf
sfqyeldfllrqfhqnvenitivgqkgtimpiearamdatlavilkkvklieitmppfas
hhtkliinfydngeckiflpsnnftsmetnlpqqvcwcspllkigkeglpvpfkrsliey
lnsyhlkdidelitksveevnfaplselefvystpskfqssgllsfynkleklsagtsas
dtakhylcqtssigtslsrardenlwthlmiplftgimsppakdtagrkkaeilptnsli
neysqrkikpyiifpteqefvtsplkwsssgwfhfqylqkksyyemlrnkfkvfykqdpa
mvtrrrgttpahskfymhcatnsagpcdasqvfkelewclytsanlsqtawgtvsrkprn
yeagvlyhsrrlantrkvtcrtftrdrrgcagnpthvavpftlpvipydlaedecfclar
hend

    Sequence, based on observed residues (ATOM records): (download) 
    >1q32D (D:)
gavfklmksdfyemitlkdifgtetlkrsilfsfqyeldfllrqfhqnvenitivgqkgt
impiearamdatlavilkkvklieitmppfashhtkliinfydngeckiflpsnnftsme
tnlpqqvcwcspllkigkeglpvpfkrslieylnsyhlkdidelitksveevnfaplsel
efvystpskfqssgllsfynkleklssdtakhylcqtssigtslsrardenlwthlmipl
ftgimspilptnslineysqrkikpyiifpteqefvtsplkwsssgwfhfqylqkksyye
mlrnkfkvfykqdpamvtrrrgttpahskfymhcatqvfkelewclytsanlsqtawgtv
srkprnyeagvlyhsrrltrkvtcrtftrdpthvavpftlpvipydlaedecfcl