PDB entry 1q0d

View 1q0d on RCSB PDB site
Description: Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the oxidized state
Class: oxidoreductase
Keywords: homohexamer of four-helix bundles, oxidoreductase
Deposited on 2003-07-16, released 2004-05-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.172
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Superoxide dismutase [Ni]
    Species: Streptomyces seoulensis [TaxId:73044]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q0da_
  • Chain 'B':
    Compound: Superoxide dismutase [Ni]
    Species: Streptomyces seoulensis [TaxId:73044]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q0db_
  • Chain 'C':
    Compound: Superoxide dismutase [Ni]
    Species: Streptomyces seoulensis [TaxId:73044]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q0dc_
  • Chain 'D':
    Compound: Superoxide dismutase [Ni]
    Species: Streptomyces seoulensis [TaxId:73044]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q0dd_
  • Chain 'E':
    Compound: Superoxide dismutase [Ni]
    Species: Streptomyces seoulensis [TaxId:73044]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q0de_
  • Chain 'F':
    Compound: Superoxide dismutase [Ni]
    Species: Streptomyces seoulensis [TaxId:73044]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q0df_
  • Chain 'G':
    Compound: Superoxide dismutase [Ni]
    Species: Streptomyces seoulensis [TaxId:73044]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q0dg_
  • Chain 'H':
    Compound: Superoxide dismutase [Ni]
    Species: Streptomyces seoulensis [TaxId:73044]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q0dh_
  • Chain 'I':
    Compound: Superoxide dismutase [Ni]
    Species: Streptomyces seoulensis [TaxId:73044]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q0di_
  • Chain 'J':
    Compound: Superoxide dismutase [Ni]
    Species: Streptomyces seoulensis [TaxId:73044]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q0dj_
  • Chain 'K':
    Compound: Superoxide dismutase [Ni]
    Species: Streptomyces seoulensis [TaxId:73044]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q0dk_
  • Chain 'L':
    Compound: Superoxide dismutase [Ni]
    Species: Streptomyces seoulensis [TaxId:73044]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1q0dl_
  • Heterogens: SO4, 3NI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q0dA (A:)
hcdlpcgvydpaqarieaesvkaiqekmaanddlhfqiratvikeqraelakhhldvlws
dyfkpphfesypelhtlvneavkalsaakastdpatgqkaldyiaqidkifwetkka

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q0dB (B:)
hcdlpcgvydpaqarieaesvkaiqekmaanddlhfqiratvikeqraelakhhldvlws
dyfkpphfesypelhtlvneavkalsaakastdpatgqkaldyiaqidkifwetkka

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q0dC (C:)
hcdlpcgvydpaqarieaesvkaiqekmaanddlhfqiratvikeqraelakhhldvlws
dyfkpphfesypelhtlvneavkalsaakastdpatgqkaldyiaqidkifwetkka

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q0dD (D:)
hcdlpcgvydpaqarieaesvkaiqekmaanddlhfqiratvikeqraelakhhldvlws
dyfkpphfesypelhtlvneavkalsaakastdpatgqkaldyiaqidkifwetkka

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q0dE (E:)
hcdlpcgvydpaqarieaesvkaiqekmaanddlhfqiratvikeqraelakhhldvlws
dyfkpphfesypelhtlvneavkalsaakastdpatgqkaldyiaqidkifwetkka

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q0dF (F:)
hcdlpcgvydpaqarieaesvkaiqekmaanddlhfqiratvikeqraelakhhldvlws
dyfkpphfesypelhtlvneavkalsaakastdpatgqkaldyiaqidkifwetkka

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q0dG (G:)
hcdlpcgvydpaqarieaesvkaiqekmaanddlhfqiratvikeqraelakhhldvlws
dyfkpphfesypelhtlvneavkalsaakastdpatgqkaldyiaqidkifwetkka

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q0dH (H:)
hcdlpcgvydpaqarieaesvkaiqekmaanddlhfqiratvikeqraelakhhldvlws
dyfkpphfesypelhtlvneavkalsaakastdpatgqkaldyiaqidkifwetkka

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q0dI (I:)
hcdlpcgvydpaqarieaesvkaiqekmaanddlhfqiratvikeqraelakhhldvlws
dyfkpphfesypelhtlvneavkalsaakastdpatgqkaldyiaqidkifwetkka

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q0dJ (J:)
hcdlpcgvydpaqarieaesvkaiqekmaanddlhfqiratvikeqraelakhhldvlws
dyfkpphfesypelhtlvneavkalsaakastdpatgqkaldyiaqidkifwetkka

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q0dK (K:)
hcdlpcgvydpaqarieaesvkaiqekmaanddlhfqiratvikeqraelakhhldvlws
dyfkpphfesypelhtlvneavkalsaakastdpatgqkaldyiaqidkifwetkka

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q0dL (L:)
hcdlpcgvydpaqarieaesvkaiqekmaanddlhfqiratvikeqraelakhhldvlws
dyfkpphfesypelhtlvneavkalsaakastdpatgqkaldyiaqidkifwetkka