PDB entry 1pyh

View 1pyh on RCSB PDB site
Description: Crystal structure of RC-LH1 core complex from Rhodopseudomonas palustris
Class: photosynthesis
Keywords: bacterial photosynthetic core complex, integral membrane proteins, light harvesting complex, reaction centre
Deposited on 2003-07-08, released 2004-03-02
The last revision prior to the SCOP 1.73 freeze date was dated 2004-03-02, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 4.8 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyh1_
  • Chain '2':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyh2_
  • Chain '3':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyh3_
  • Chain '4':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyh4_
  • Chain '5':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyh5_
  • Chain '6':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyh6_
  • Chain '7':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyh7_
  • Chain '8':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyh8_
  • Chain 'A':
    Compound: reaction center protein l chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyha_
  • Chain 'B':
    Compound: reaction center protein m chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhb_
  • Chain 'C':
    Compound: reaction center protein h chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhc_
  • Chain 'D':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhd_
  • Chain 'E':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhe_
  • Chain 'F':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhf_
  • Chain 'G':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhg_
  • Chain 'H':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhh_
  • Chain 'I':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhi_
  • Chain 'J':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhj_
  • Chain 'K':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhk_
  • Chain 'L':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhl_
  • Chain 'M':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhm_
  • Chain 'N':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhn_
  • Chain 'O':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyho_
  • Chain 'P':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhp_
  • Chain 'Q':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhq_
  • Chain 'R':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhr_
  • Chain 'S':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhs_
  • Chain 'T':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyht_
  • Chain 'U':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhu_
  • Chain 'V':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhv_
  • Chain 'W':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhw_
  • Chain 'X':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhx_
  • Chain 'Y':
    Compound: Light-harvesting protein B-800/850, beta chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhy_
  • Chain 'Z':
    Compound: Light-harvesting protein B-800/850, alpha chain
    Species: Rhodopseudomonas palustris
    Domains in SCOP 1.73: d1pyhz_
  • Heterogens: FE, BCL, BPH

PDB Chain Sequences:

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyh1 (1:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain '2':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyh2 (2:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyh3 (3:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain '4':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyh4 (4:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain '5':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyh5 (5:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain '6':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyh6 (6:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain '7':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyh7 (7:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain '8':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyh8 (8:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhA (A:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhB (B:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xx

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhC (C:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
x

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhD (D:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhE (E:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhF (F:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhG (G:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhH (H:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhI (I:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhJ (J:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhK (K:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhL (L:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhM (M:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhN (N:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhO (O:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhP (P:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhQ (Q:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhR (R:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhS (S:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhT (T:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'U':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhU (U:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'V':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhV (V:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhW (W:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhX (X:)
xxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhY (Y:)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

  • Chain 'Z':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pyhZ (Z:)
xxxxxxxxxxxxxxxxxxxxxxxxxx