PDB entry 1ppj

View 1ppj on RCSB PDB site
Description: Bovine cytochrome bc1 complex with stigmatellin and antimycin
Class: oxidoreductase
Keywords: cytochrome bc1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome b, cytochrome c1, complex III, mitochondrial processing protease, mpp ubiquinone, oxidoreductase, redox enzyme, respiratory chain, stigmatellin, antimycin
Deposited on 2003-06-16, released 2004-07-20
The last revision prior to the SCOPe 2.04 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.224
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppja1, d1ppja2
  • Chain 'B':
    Compound: Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjb1, d1ppjb2
  • Chain 'C':
    Compound: cytochrome b
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjc1, d1ppjc2
  • Chain 'D':
    Compound: Cytochrome c1, heme protein, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjd1, d1ppjd2
  • Chain 'E':
    Compound: Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppje1, d1ppje2
  • Chain 'F':
    Compound: Ubiquinol-cytochrome c reductase complex 14 kDa protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjf_
  • Chain 'G':
    Compound: ubiquinol-cytochrome c reductase complex ubiquinone-binding protein qp-c
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjg_
  • Chain 'H':
    Compound: Ubiquinol-cytochrome c reductase complex 11 kDa protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjh_
  • Chain 'I':
    Compound: Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppji_
  • Chain 'J':
    Compound: Ubiquinol-cytochrome c reductase complex 7.2 kDa protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjj_
  • Chain 'N':
    Compound: Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjn1, d1ppjn2
  • Chain 'O':
    Compound: Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjo1, d1ppjo2
  • Chain 'P':
    Compound: cytochrome b
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjp1, d1ppjp2
  • Chain 'Q':
    Compound: Cytochrome c1, heme protein, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjq1, d1ppjq2
  • Chain 'R':
    Compound: Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjr1, d1ppjr2
  • Chain 'S':
    Compound: Ubiquinol-cytochrome c reductase complex 14 kDa protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjs_
  • Chain 'T':
    Compound: ubiquinol-cytochrome c reductase complex ubiquinone-binding protein qp-c
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjt_
  • Chain 'U':
    Compound: Ubiquinol-cytochrome c reductase complex 11 kDa protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppju_
  • Chain 'V':
    Compound: Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjv_
  • Chain 'W':
    Compound: Ubiquinol-cytochrome c reductase complex 7.2 kDa protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1ppjw_
  • Heterogens: BHG, AZI, PO4, HEM, HEC, FES, SMA, CDL, PEE, ANY, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ppjA (A:)
tatyaqalqsvpetqvsqldnglrvaseqssqptctvgvwidagsryeseknngagyfve
hlafkgtknrpgnalekevesmgahlnaystrehtayyikalskdlpkavelladivqnc
sledsqiekerdvilqelqendtsmrdvvfnylhatafqgtplaqsvegpsenvrklsra
dlteylsrhykaprmvlaaagglehrqlldlaqkhfsglsgtydedavptlspcrftgsq
ichredglplahvaiavegpgwahpdnvalqvanaiighydctygggahlssplasiaat
nklcqsfqtfnicyadtgllgahfvcdhmsiddmmfvlqgqwmrlctsatesevlrgknl
lrnalvshldgttpvcedigrslltygrriplaewesriaevdarvvrevcskyfydqcp
avagfgpieqlpdynrirsgmfwlrf

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjA (A:)
atyaqalqsvpetqvsqldnglrvaseqssqptctvgvwidagsryeseknngagyfveh
lafkgtknrpgnalekevesmgahlnaystrehtayyikalskdlpkavelladivqncs
ledsqiekerdvilqelqendtsmrdvvfnylhatafqgtplaqsvegpsenvrklsrad
lteylsrhykaprmvlaaagglehrqlldlaqkhfsglsgtydedavptlspcrftgsqi
chredglplahvaiavegpgwahpdnvalqvanaiighydctygggahlssplasiaatn
klcqsfqtfnicyadtgllgahfvcdhmsiddmmfvlqgqwmrlctsatesevlrgknll
rnalvshldgttpvcedigrslltygrriplaewesriaevdarvvrevcskyfydqcpa
vagfgpieqlpdynrirsgmfw

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ppjB (B:)
slkvapkvkateapagvpphpqdleftrlpnglviaslenyapasriglfikagsryens
nnlgtshllrlasslttkgassfkitrgieavggklsvtstrenmaytveclrddvdilm
efllnvttapefrrwevaalqpqlridkavalqnpqahvienlhaaayrnalanslycpd
yrigkvtpvelhdyvqnhftsarmaliglgvshpvlkqvaeqflnirgglglsgakakyh
ggeireqngdslvhaalvaesaaigsaeanafsvlqhvlgagphvkrgsnatsslyqava
kgvhqpfdvsafnasysdsglfgfytisqaasagdvikaaynqvktiaqgnlsnpdvqaa
knklkagylmsvessegfldevgsqalaagsytppstvlqqidavadadvinaakkfvsg
rksmaasgnlghtpfidel

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjB (B:)
evpphpqdleftrlpnglviaslenyapasriglfikagsryensnnlgtshllrlassl
ttkgassfkitrgieavggklsvtstrenmaytveclrddvdilmefllnvttapefrrw
evaalqpqlridkavalqnpqahvienlhaaayrnalanslycpdyrigkvtpvelhdyv
qnhftsarmaliglgvshpvlkqvaeqflnirgglglsgakakyhggeireqngdslvha
alvaesaaigsaeanafsvlqhvlgagphvkrgsnatsslyqavakgvhqpfdvsafnas
ysdsglfgfytisqaasagdvikaaynqvktiaqgnlsnpdvqaaknklkagylmsvess
egfldevgsqalaagsytppstvlqqidavadadvinaakkfvsgrksmaasgnlghtpf
idel

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1ppjC (C:)
mtnirkshplmkivnnafidlpapsnisswwnfgsllgiclilqiltglflamhytsdtt
tafssvthicrdvnygwiirymhangasmfficlymhvgrglyygsytfletwnigvill
ltvmatafmgyvlpwgqmsfwgatvitnllsaipyigtnlvewiwggfsvdkatltrffa
fhfilpfiimaiamvhllflhetgsnnptgissdvdkipfhpyytikdilgalllilalm
llvlfapdllgdpdnytpanplntpphikpewyflfayailrsipnklggvlalafsili
lalipllhtskqrsmmfrplsqclfwalvadlltltwiggqpvehpyitigqlasvlyfl
lilvlmptagtienkllkw

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjC (C:)
nnafidlpapsnisswwnfgsllgiclilqiltglflamhytsdtttafssvthicrdvn
ygwiirymhangasmfficlymhvgrglyygsytfletwnigvillltvmatafmgyvlp
wgqmsfwgatvitnllsaipyigtnlvewiwggfsvdkatltrffafhfilpfiimaiam
vhllflhetgsnnptgissdvdkipfhpyytikdilgalllilalmllvlfapdllgdpd
nytpanplntpphikpewyflfayailrsipnklggvlalafsililalipllhtskqrs
mmfrplsqclfwalvadlltltwiggqpvehpyitigqlasvlyfllilvlmptagtien
kllkw

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ppjD (D:)
sdlelhppsypwshrgllssldhtsirrgfqvykqvcsschsmdyvayrhlvgvcytede
akalaeevevqdgpnedgemfmrpgklsdyfpkpypnpeaaraanngalppdlsyivrar
hggedyvfslltgycepptgvslreglyfnpyfpgqaigmappiynevlefddgtpatms
qvakdvctflrwaaepehdhrkrmglkmllmmglllplvyamkrhkwsvlksrklayrpp
k

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ppjE (E:)
shtdikvpdfsdyrrpevldstksskessearkgfsylvtatttvgvayaaknvvsqfvs
smsasadvlamskieiklsdipegknmafkwrgkplfvrhrtkkeidqeaavevsqlrdp
qhdlervkkpewviligvcthlgcvpianagdfggyycpchgshydasgrirkgpaplnl
evpsyeftsddmvivg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1ppjF (F:)
agrpavsassrwlegirkwyynaagfnklglmrddtihenddvkeairrlpenlyddrvf
rikraldlsmrqqilpkeqwtkyeedksylepylkevirerkereewakk

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjF (F:)
wlegirkwyynaagfnklglmrddtihenddvkeairrlpenlyddrvfrikraldlsmr
qqilpkeqwtkyeedksylepylkevirerkereewakk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1ppjG (G:)
grqfghltrvrhvityslspfeqrafphyfskgipnvlrrtracilrvappfvafylvyt
wgtqefekskrknpaayendr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjG (G:)
grqfghltrvrhvityslspfeqrafphyfskgipnvlrrtracilrvappfvafylvyt
wgtqefekskrknpa

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1ppjH (H:)
gdpkeeeeeeeelvdplttvreqceqlekcvkarerlelcdervssrsqteedcteelld
flhardhcvahklfnslk

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjH (H:)
lvdplttvreqceqlekcvkarerlelcdervssrsqteedcteelldflhardhcvahk
lfnslk

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1ppjI (I:)
mlsvaarsgpfapvlsatsrgvagalrplvqaavpatsespvldlklsvlcreslrgqaa
grplvasvslnvpasvry

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjI (I:)
aavpatsespvlsvlcreslrgqaagrplvasvslnvpasvry

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1ppjJ (J:)
vaptltarlysllfrrtstfaltivvgalfferafdqgadaiyehinegklwkhikhkye
nk

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjJ (J:)
fferafdqgadaiyehinegklwkhikhkyenk

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >1ppjN (N:)
tatyaqalqsvpetqvsqldnglrvaseqssqptctvgvwidagsryeseknngagyfve
hlafkgtknrpgnalekevesmgahlnaystrehtayyikalskdlpkavelladivqnc
sledsqiekerdvilqelqendtsmrdvvfnylhatafqgtplaqsvegpsenvrklsra
dlteylsrhykaprmvlaaagglehrqlldlaqkhfsglsgtydedavptlspcrftgsq
ichredglplahvaiavegpgwahpdnvalqvanaiighydctygggahlssplasiaat
nklcqsfqtfnicyadtgllgahfvcdhmsiddmmfvlqgqwmrlctsatesevlrgknl
lrnalvshldgttpvcedigrslltygrriplaewesriaevdarvvrevcskyfydqcp
avagfgpieqlpdynrirsgmfwlrf

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjN (N:)
atyaqalqsvpetqvsqldnglrvaseqssqptctvgvwidagsryeseknngagyfveh
lafkgtknrpgnalekevesmgahlnaystrehtayyikalskdlpkavelladivqncs
ledsqiekerdvilqelqendtsmrdvvfnylhatafqgtplaqsvegpsenvrklsrad
lteylsrhykaprmvlaaagglehrqlldlaqkhfsglsgtydedavptlspcrftgsqi
chredglplahvaiavegpgwahpdnvalqvanaiighydctygggahlssplasiaatn
klcqsfqtfnicyadtgllgahfvcdhmsiddmmfvlqgqwmrlctsatesevlrgknll
rnalvshldgttpvcedigrslltygrriplaewesriaevdarvvrevcskyfydqcpa
vagfgpieqlpdynrirsgmfw

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >1ppjO (O:)
slkvapkvkateapagvpphpqdleftrlpnglviaslenyapasriglfikagsryens
nnlgtshllrlasslttkgassfkitrgieavggklsvtstrenmaytveclrddvdilm
efllnvttapefrrwevaalqpqlridkavalqnpqahvienlhaaayrnalanslycpd
yrigkvtpvelhdyvqnhftsarmaliglgvshpvlkqvaeqflnirgglglsgakakyh
ggeireqngdslvhaalvaesaaigsaeanafsvlqhvlgagphvkrgsnatsslyqava
kgvhqpfdvsafnasysdsglfgfytisqaasagdvikaaynqvktiaqgnlsnpdvqaa
knklkagylmsvessegfldevgsqalaagsytppstvlqqidavadadvinaakkfvsg
rksmaasgnlghtpfidel

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjO (O:)
evpphpqdleftrlpnglviaslenyapasriglfikagsryensnnlgtshllrlassl
ttkgassfkitrgieavggklsvtstrenmaytveclrddvdilmefllnvttapefrrw
evaalqpqlridkavalqnpqahvienlhaaayrnalanslycpdyrigkvtpvelhdyv
qnhftsarmaliglgvshpvlkqvaeqflnirgglglsgakakyhggeireqngdslvha
alvaesaaigsaeanafsvlqhvlgagphvkrgsnatsslyqavakgvhqpfdvsafnas
ysdsglfgfytisqaasagdvikaaynqvktiaqgnlsnpdvqaaknklkagylmsvess
egfldevgsqalaagsytppstvlqqidavadadvinaakkfvsgrksmaasgnlghtpf
idel

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >1ppjP (P:)
mtnirkshplmkivnnafidlpapsnisswwnfgsllgiclilqiltglflamhytsdtt
tafssvthicrdvnygwiirymhangasmfficlymhvgrglyygsytfletwnigvill
ltvmatafmgyvlpwgqmsfwgatvitnllsaipyigtnlvewiwggfsvdkatltrffa
fhfilpfiimaiamvhllflhetgsnnptgissdvdkipfhpyytikdilgalllilalm
llvlfapdllgdpdnytpanplntpphikpewyflfayailrsipnklggvlalafsili
lalipllhtskqrsmmfrplsqclfwalvadlltltwiggqpvehpyitigqlasvlyfl
lilvlmptagtienkllkw

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjP (P:)
nnafidlpapsnisswwnfgsllgiclilqiltglflamhytsdtttafssvthicrdvn
ygwiirymhangasmfficlymhvgrglyygsytfletwnigvillltvmatafmgyvlp
wgqmsfwgatvitnllsaipyigtnlvewiwggfsvdkatltrffafhfilpfiimaiam
vhllflhetgsnnptgissdvdkipfhpyytikdilgalllilalmllvlfapdllgdpd
nytpanplntpphikpewyflfayailrsipnklggvlalafsililalipllhtskqrs
mmfrplsqclfwalvadlltltwiggqpvehpyitigqlasvlyfllilvlmptagtien
kllkw

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ppjQ (Q:)
sdlelhppsypwshrgllssldhtsirrgfqvykqvcsschsmdyvayrhlvgvcytede
akalaeevevqdgpnedgemfmrpgklsdyfpkpypnpeaaraanngalppdlsyivrar
hggedyvfslltgycepptgvslreglyfnpyfpgqaigmappiynevlefddgtpatms
qvakdvctflrwaaepehdhrkrmglkmllmmglllplvyamkrhkwsvlksrklayrpp
k

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ppjR (R:)
shtdikvpdfsdyrrpevldstksskessearkgfsylvtatttvgvayaaknvvsqfvs
smsasadvlamskieiklsdipegknmafkwrgkplfvrhrtkkeidqeaavevsqlrdp
qhdlervkkpewviligvcthlgcvpianagdfggyycpchgshydasgrirkgpaplnl
evpsyeftsddmvivg

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >1ppjS (S:)
agrpavsassrwlegirkwyynaagfnklglmrddtihenddvkeairrlpenlyddrvf
rikraldlsmrqqilpkeqwtkyeedksylepylkevirerkereewakk

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjS (S:)
wlegirkwyynaagfnklglmrddtihenddvkeairrlpenlyddrvfrikraldlsmr
qqilpkeqwtkyeedksylepylkevirerkereewakk

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >1ppjT (T:)
grqfghltrvrhvityslspfeqrafphyfskgipnvlrrtracilrvappfvafylvyt
wgtqefekskrknpaayendr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjT (T:)
grqfghltrvrhvityslspfeqrafphyfskgipnvlrrtracilrvappfvafylvyt
wgtqefekskrknpaa

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >1ppjU (U:)
gdpkeeeeeeeelvdplttvreqceqlekcvkarerlelcdervssrsqteedcteelld
flhardhcvahklfnslk

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjU (U:)
lvdplttvreqceqlekcvkarerlelcdervssrsqteedcteelldflhardhcvahk
lfnslk

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >1ppjV (V:)
mlsvaarsgpfapvlsatsrgvagalrplvqaavpatsespvldlklsvlcreslrgqaa
grplvasvslnvpasvry

    Sequence, based on observed residues (ATOM records): (download) 
    >1ppjV (V:)
aavpatsespvlsvlcreslrgqaagrplvasvslnvpasvry

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ppjW (W:)
vaptltarlysllfrrtstfaltivvgalfferafdqgadaiyehinegklwkhikhkye
nk