PDB entry 1pp9

View 1pp9 on RCSB PDB site
Description: Bovine cytochrome bc1 complex with stigmatellin bound
Class: oxidoreductase
Keywords: cytochrome bc1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome b, cytochrome c1, complex III, mitochondrial processing protease, mpp ubiquinone, oxidoreductase, redox enzyme, respiratory chain, stigmatellin
Deposited on 2003-06-16, released 2004-07-20
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.25
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9a1, d1pp9a2
  • Chain 'B':
    Compound: Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9b1, d1pp9b2
  • Chain 'C':
    Compound: cytochrome b
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9c1, d1pp9c2
  • Chain 'D':
    Compound: Cytochrome c1, heme protein, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9d1, d1pp9d2
  • Chain 'E':
    Compound: Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9e1, d1pp9e2
  • Chain 'F':
    Compound: Ubiquinol-cytochrome c reductase complex 14 kDa protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9f_
  • Chain 'G':
    Compound: ubiquinol-cytochrome c reductase complex ubiquinone-binding protein qp-c
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9g_
  • Chain 'H':
    Compound: Ubiquinol-cytochrome c reductase complex 11 kDa protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9h_
  • Chain 'I':
    Compound: Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9i_
  • Chain 'J':
    Compound: Ubiquinol-cytochrome c reductase complex 7.2 kDa protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9j_
  • Chain 'N':
    Compound: Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9n1, d1pp9n2
  • Chain 'O':
    Compound: Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9o1, d1pp9o2
  • Chain 'P':
    Compound: cytochrome b
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9p1, d1pp9p2
  • Chain 'Q':
    Compound: Cytochrome c1, heme protein, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9q1, d1pp9q2
  • Chain 'R':
    Compound: Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9r1, d1pp9r2
  • Chain 'S':
    Compound: Ubiquinol-cytochrome c reductase complex 14 kDa protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9s_
  • Chain 'T':
    Compound: ubiquinol-cytochrome c reductase complex ubiquinone-binding protein qp-c
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9t_
  • Chain 'U':
    Compound: Ubiquinol-cytochrome c reductase complex 11 kDa protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9u_
  • Chain 'V':
    Compound: Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9v_
  • Chain 'W':
    Compound: Ubiquinol-cytochrome c reductase complex 7.2 kDa protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pp9w_
  • Heterogens: BHG, PO4, AZI, HEM, HEC, FES, SMA, UQ, CDL, PEE, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1pp9A (A:)
tatyaqalqsvpetqvsqldnglrvaseqssqptctvgvwidagsryeseknngagyfve
hlafkgtknrpgnalekevesmgahlnaystrehtayyikalskdlpkavelladivqnc
sledsqiekerdvilqelqendtsmrdvvfnylhatafqgtplaqsvegpsenvrklsra
dlteylsrhykaprmvlaaagglehrqlldlaqkhfsglsgtydedavptlspcrftgsq
ichredglplahvaiavegpgwahpdnvalqvanaiighydctygggahlssplasiaat
nklcqsfqtfnicyadtgllgahfvcdhmsiddmmfvlqgqwmrlctsatesevlrgknl
lrnalvshldgttpvcedigrslltygrriplaewesriaevdarvvrevcskyfydqcp
avagfgpieqlpdynrirsgmfwlrf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9A (A:)
tatyaqalqsvpetqvsqldnglrvaseqssqptctvgvwidagsryeseknngagyfve
hlafkgtknrpgnalekevesmgahlnaystrehtayyikalskdlpkavelladivqnc
sledsqiekerdvilqelqendtsmrdvvfnylhatafqgtplaqsvegpsenvrklsra
dlteylsrhykaprmvlaaagglehrqlldlaqkhfsglsgtydedavptlspcrftgsq
ichredglplahvaiavegpgwahpdnvalqvanaiighydctygggahlssplasiaat
nklcqsfqtfnicyadtgllgahfvcdhmsiddmmfvlqgqwmrlctsatesevlrgknl
lrnalvshldgttpvcedigrslltygrriplaewesriaevdarvvrevcskyfydqcp
avagfgpieqlpdynrirsgmfw

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1pp9B (B:)
slkvapkvkateapagvpphpqdleftrlpnglviaslenyapasriglfikagsryens
nnlgtshllrlasslttkgassfkitrgieavggklsvtstrenmaytveclrddvdilm
efllnvttapefrrwevaalqpqlridkavalqnpqahvienlhaaayrnalanslycpd
yrigkvtpvelhdyvqnhftsarmaliglgvshpvlkqvaeqflnirgglglsgakakyh
ggeireqngdslvhaalvaesaaigsaeanafsvlqhvlgagphvkrgsnatsslyqava
kgvhqpfdvsafnasysdsglfgfytisqaasagdvikaaynqvktiaqgnlsnpdvqaa
knklkagylmsvessegfldevgsqalaagsytppstvlqqidavadadvinaakkfvsg
rksmaasgnlghtpfidel

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9B (B:)
evpphpqdleftrlpnglviaslenyapasriglfikagsryensnnlgtshllrlassl
ttkgassfkitrgieavggklsvtstrenmaytveclrddvdilmefllnvttapefrrw
evaalqpqlridkavalqnpqahvienlhaaayrnalanslycpdyrigkvtpvelhdyv
qnhftsarmaliglgvshpvlkqvaeqflnirgglglsgakakyhggeireqngdslvha
alvaesaaigsaeanafsvlqhvlgagphvkrgsnatsslyqavakgvhqpfdvsafnas
ysdsglfgfytisqaasagdvikaaynqvktiaqgnlsnpdvqaaknklkagylmsvess
egfldevgsqalaagsytppstvlqqidavadadvinaakkfvsgrksmaasgnlghtpf
idel

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1pp9C (C:)
mtnirkshplmkivnnafidlpapsnisswwnfgsllgiclilqiltglflamhytsdtt
tafssvthicrdvnygwiirymhangasmfficlymhvgrglyygsytfletwnigvill
ltvmatafmgyvlpwgqmsfwgatvitnllsaipyigtnlvewiwggfsvdkatltrffa
fhfilpfiimaiamvhllflhetgsnnptgissdvdkipfhpyytikdilgalllilalm
llvlfapdllgdpdnytpanplntpphikpewyflfayailrsipnklggvlalafsili
lalipllhtskqrsmmfrplsqclfwalvadlltltwiggqpvehpyitigqlasvlyfl
lilvlmptagtienkllkw

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9C (C:)
nnafidlpapsnisswwnfgsllgiclilqiltglflamhytsdtttafssvthicrdvn
ygwiirymhangasmfficlymhvgrglyygsytfletwnigvillltvmatafmgyvlp
wgqmsfwgatvitnllsaipyigtnlvewiwggfsvdkatltrffafhfilpfiimaiam
vhllflhetgsnnptgissdvdkipfhpyytikdilgalllilalmllvlfapdllgdpd
nytpanplntpphikpewyflfayailrsipnklggvlalafsililalipllhtskqrs
mmfrplsqclfwalvadlltltwiggqpvehpyitigqlasvlyfllilvlmptagtien
kllkw

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pp9D (D:)
sdlelhppsypwshrgllssldhtsirrgfqvykqvcsschsmdyvayrhlvgvcytede
akalaeevevqdgpnedgemfmrpgklsdyfpkpypnpeaaraanngalppdlsyivrar
hggedyvfslltgycepptgvslreglyfnpyfpgqaigmappiynevlefddgtpatms
qvakdvctflrwaaepehdhrkrmglkmllmmglllplvyamkrhkwsvlksrklayrpp
k

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pp9E (E:)
shtdikvpdfsdyrrpevldstksskessearkgfsylvtatttvgvayaaknvvsqfvs
smsasadvlamskieiklsdipegknmafkwrgkplfvrhrtkkeidqeaavevsqlrdp
qhdlervkkpewviligvcthlgcvpianagdfggyycpchgshydasgrirkgpaplnl
evpsyeftsddmvivg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1pp9F (F:)
agrpavsassrwlegirkwyynaagfnklglmrddtihenddvkeairrlpenlyddrvf
rikraldlsmrqqilpkeqwtkyeedksylepylkevirerkereewakk

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9F (F:)
wlegirkwyynaagfnklglmrddtihenddvkeairrlpenlyddrvfrikraldlsmr
qqilpkeqwtkyeedksylepylkevirerkereewakk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1pp9G (G:)
grqfghltrvrhvityslspfeqrafphyfskgipnvlrrtracilrvappfvafylvyt
wgtqefekskrknpaayendr

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9G (G:)
grqfghltrvrhvityslspfeqrafphyfskgipnvlrrtracilrvappfvafylvyt
wgtqefekskrknpa

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1pp9H (H:)
gdpkeeeeeeeelvdplttvreqceqlekcvkarerlelcdervssrsqteedcteelld
flhardhcvahklfnslk

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9H (H:)
lvdplttvreqceqlekcvkarerlelcdervssrsqteedcteelldflhardhcvahk
lfnslk

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1pp9I (I:)
mlsvaarsgpfapvlsatsrgvagalrplvqaavpatsespvldlkrsvlcreslrgqaa
grplvasvslnvpasvry

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9I (I:)
aavpatsespvsvlcreslrgqaagrplvasvslnvpasvry

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pp9J (J:)
vaptltarlysllfrrtstfaltivvgalfferafdqgadaiyehinegklwkhikhkye
nk

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >1pp9N (N:)
tatyaqalqsvpetqvsqldnglrvaseqssqptctvgvwidagsryeseknngagyfve
hlafkgtknrpgnalekevesmgahlnaystrehtayyikalskdlpkavelladivqnc
sledsqiekerdvilqelqendtsmrdvvfnylhatafqgtplaqsvegpsenvrklsra
dlteylsrhykaprmvlaaagglehrqlldlaqkhfsglsgtydedavptlspcrftgsq
ichredglplahvaiavegpgwahpdnvalqvanaiighydctygggahlssplasiaat
nklcqsfqtfnicyadtgllgahfvcdhmsiddmmfvlqgqwmrlctsatesevlrgknl
lrnalvshldgttpvcedigrslltygrriplaewesriaevdarvvrevcskyfydqcp
avagfgpieqlpdynrirsgmfwlrf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9N (N:)
tatyaqalqsvpetqvsqldnglrvaseqssqptctvgvwidagsryeseknngagyfve
hlafkgtknrpgnalekevesmgahlnaystrehtayyikalskdlpkavelladivqnc
sledsqiekerdvilqelqendtsmrdvvfnylhatafqgtplaqsvegpsenvrklsra
dlteylsrhykaprmvlaaagglehrqlldlaqkhfsglsgtydedavptlspcrftgsq
ichredglplahvaiavegpgwahpdnvalqvanaiighydctygggahlssplasiaat
nklcqsfqtfnicyadtgllgahfvcdhmsiddmmfvlqgqwmrlctsatesevlrgknl
lrnalvshldgttpvcedigrslltygrriplaewesriaevdarvvrevcskyfydqcp
avagfgpieqlpdynrirsgmfw

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >1pp9O (O:)
slkvapkvkateapagvpphpqdleftrlpnglviaslenyapasriglfikagsryens
nnlgtshllrlasslttkgassfkitrgieavggklsvtstrenmaytveclrddvdilm
efllnvttapefrrwevaalqpqlridkavalqnpqahvienlhaaayrnalanslycpd
yrigkvtpvelhdyvqnhftsarmaliglgvshpvlkqvaeqflnirgglglsgakakyh
ggeireqngdslvhaalvaesaaigsaeanafsvlqhvlgagphvkrgsnatsslyqava
kgvhqpfdvsafnasysdsglfgfytisqaasagdvikaaynqvktiaqgnlsnpdvqaa
knklkagylmsvessegfldevgsqalaagsytppstvlqqidavadadvinaakkfvsg
rksmaasgnlghtpfidel

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9O (O:)
evpphpqdleftrlpnglviaslenyapasriglfikagsryensnnlgtshllrlassl
ttkgassfkitrgieavggklsvtstrenmaytveclrddvdilmefllnvttapefrrw
evaalqpqlridkavalqnpqahvienlhaaayrnalanslycpdyrigkvtpvelhdyv
qnhftsarmaliglgvshpvlkqvaeqflnirgglglsgakakyhggeireqngdslvha
alvaesaaigsaeanafsvlqhvlgagphvkrgsnatsslyqavakgvhqpfdvsafnas
ysdsglfgfytisqaasagdvikaaynqvktiaqgnlsnpdvqaaknklkagylmsvess
egfldevgsqalaagsytppstvlqqidavadadvinaakkfvsgrksmaasgnlghtpf
idel

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >1pp9P (P:)
mtnirkshplmkivnnafidlpapsnisswwnfgsllgiclilqiltglflamhytsdtt
tafssvthicrdvnygwiirymhangasmfficlymhvgrglyygsytfletwnigvill
ltvmatafmgyvlpwgqmsfwgatvitnllsaipyigtnlvewiwggfsvdkatltrffa
fhfilpfiimaiamvhllflhetgsnnptgissdvdkipfhpyytikdilgalllilalm
llvlfapdllgdpdnytpanplntpphikpewyflfayailrsipnklggvlalafsili
lalipllhtskqrsmmfrplsqclfwalvadlltltwiggqpvehpyitigqlasvlyfl
lilvlmptagtienkllkw

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9P (P:)
lmkivnnafidlpapsnisswwnfgsllgiclilqiltglflamhytsdtttafssvthi
crdvnygwiirymhangasmfficlymhvgrglyygsytfletwnigvillltvmatafm
gyvlpwgqmsfwgatvitnllsaipyigtnlvewiwggfsvdkatltrffafhfilpfii
maiamvhllflhetgsnnptgissdvdkipfhpyytikdilgalllilalmllvlfapdl
lgdpdnytpanplntpphikpewyflfayailrsipnklggvlalafsililalipllht
skqrsmmfrplsqclfwalvadlltltwiggqpvehpyitigqlasvlyfllilvlmpta
gtienkllkw

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pp9Q (Q:)
sdlelhppsypwshrgllssldhtsirrgfqvykqvcsschsmdyvayrhlvgvcytede
akalaeevevqdgpnedgemfmrpgklsdyfpkpypnpeaaraanngalppdlsyivrar
hggedyvfslltgycepptgvslreglyfnpyfpgqaigmappiynevlefddgtpatms
qvakdvctflrwaaepehdhrkrmglkmllmmglllplvyamkrhkwsvlksrklayrpp
k

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pp9R (R:)
shtdikvpdfsdyrrpevldstksskessearkgfsylvtatttvgvayaaknvvsqfvs
smsasadvlamskieiklsdipegknmafkwrgkplfvrhrtkkeidqeaavevsqlrdp
qhdlervkkpewviligvcthlgcvpianagdfggyycpchgshydasgrirkgpaplnl
evpsyeftsddmvivg

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >1pp9S (S:)
agrpavsassrwlegirkwyynaagfnklglmrddtihenddvkeairrlpenlyddrvf
rikraldlsmrqqilpkeqwtkyeedksylepylkevirerkereewakk

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9S (S:)
wlegirkwyynaagfnklglmrddtihenddvkeairrlpenlyddrvfrikraldlsmr
qqilpkeqwtkyeedksylepylkevirerkereewakk

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >1pp9T (T:)
grqfghltrvrhvityslspfeqrafphyfskgipnvlrrtracilrvappfvafylvyt
wgtqefekskrknpaayendr

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9T (T:)
grqfghltrvrhvityslspfeqrafphyfskgipnvlrrtracilrvappfvafylvyt
wgtqefekskrknpaa

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >1pp9U (U:)
gdpkeeeeeeeelvdplttvreqceqlekcvkarerlelcdervssrsqteedcteelld
flhardhcvahklfnslk

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9U (U:)
lvdplttvreqceqlekcvkarerlelcdervssrsqteedcteelldflhardhcvahk
lfnslk

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >1pp9V (V:)
mlsvaarsgpfapvlsatsrgvagalrplvqaavpatsespvldlkrsvlcreslrgqaa
grplvasvslnvpasvry

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp9V (V:)
aavpatsespvsvlcreslrgqaagrplvasvslnvpasvry

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pp9W (W:)
vaptltarlysllfrrtstfaltivvgalfferafdqgadaiyehinegklwkhikhkye
nk