PDB entry 1pp8

View 1pp8 on RCSB PDB site
Description: crystal structure of the T. vaginalis IBP39 Initiator binding domain (IBD) bound to the alpha-SCS Inr element
Class: Transcription/DNA
Keywords: IBP39, Initiator binding protein, Inr, core promoter, transcription, T. vaginalis, Transcription/DNA COMPLEX
Deposited on 2003-06-16, released 2003-11-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.05 Å
R-factor: 0.269
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'E':
    Compound: alpha-scs inr
  • Chain 'F':
    Compound: 39 kDa initiator binding protein
    Species: Trichomonas vaginalis [TaxId:5722]
    Gene: Trichomonas vaginalis:IBP39
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1pp8f_
  • Chain 'G':
    Compound: alpha-scs inr
  • Chain 'I':
    Compound: alpha-scs inr
  • Chain 'J':
    Compound: alpha-scs inr
  • Chain 'K':
    Compound: alpha-scs inr
  • Chain 'M':
    Compound: 39 kDa initiator binding protein
    Species: Trichomonas vaginalis [TaxId:5722]
    Gene: Trichomonas vaginalis:IBP39
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1pp8m_
  • Chain 'O':
    Compound: 39 kDa initiator binding protein
    Species: Trichomonas vaginalis [TaxId:5722]
    Gene: Trichomonas vaginalis:IBP39
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1pp8o_
  • Chain 'P':
    Compound: 39 kDa initiator binding protein
    Species: Trichomonas vaginalis [TaxId:5722]
    Gene: Trichomonas vaginalis:IBP39
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1pp8p_
  • Chain 'R':
    Compound: alpha-scs inr
  • Chain 'T':
    Compound: alpha-scs inr
  • Chain 'U':
    Compound: 39 kDa initiator binding protein
    Species: Trichomonas vaginalis [TaxId:5722]
    Gene: Trichomonas vaginalis:IBP39
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1pp8u_
  • Chain 'V':
    Compound: 39 kDa initiator binding protein
    Species: Trichomonas vaginalis [TaxId:5722]
    Gene: Trichomonas vaginalis:IBP39
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1pp8v_
  • Chain 'Y':
    Compound: alpha-scs inr
  • Heterogens: SO4

PDB Chain Sequences:

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1pp8F (F:)
mdsndleasftsrlppeivaalkrkssrdpnsrfprklhmlltylasnpqleeeiglswi
sdtefkmkkknvalvmgiklntlnvnlrdlafeqlqhdkggwtqwkrsgftrnsvfedpt
qndspmhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp8F (F:)
dsndleasftsrlppeivaalkrkssrdpnsrfprklhmlltylasnpqleeeiglswis
dtefkmkkknvalvmgiklntlnvnlrdlafeqlqhdkggwtqwkrsgftrns

  • Chain 'G':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1pp8M (M:)
mdsndleasftsrlppeivaalkrkssrdpnsrfprklhmlltylasnpqleeeiglswi
sdtefkmkkknvalvmgiklntlnvnlrdlafeqlqhdkggwtqwkrsgftrnsvfedpt
qndspmhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp8M (M:)
mdsndleasftsrlppeivaalkrkssrdpnsrfprklhmlltylasnpqleeeiglswi
sdtefkmkkknvalvmgiklntlnvnlrdlafeqlqhdkggwtqwkrsgftrnsvfed

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >1pp8O (O:)
mdsndleasftsrlppeivaalkrkssrdpnsrfprklhmlltylasnpqleeeiglswi
sdtefkmkkknvalvmgiklntlnvnlrdlafeqlqhdkggwtqwkrsgftrnsvfedpt
qndspmhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp8O (O:)
ftsrlppeivaalkrfprklhmlltylasnpqleeeiglswisdtefkmkkknvalvmgi
klntlnvnlrdlafeqlqhdkggwtqwkrsgftrnsv

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >1pp8P (P:)
mdsndleasftsrlppeivaalkrkssrdpnsrfprklhmlltylasnpqleeeiglswi
sdtefkmkkknvalvmgiklntlnvnlrdlafeqlqhdkggwtqwkrsgftrnsvfedpt
qndspmhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp8P (P:)
mdsndleasftsrlppeivaalkrkssrdpnsrfprklhmlltylasnpqleeeiglswi
sdtefkmkkknvalvmgiklntlnvnlrdlafeqlqhdkggwtqwkrsgftrnsvfed

  • Chain 'R':
    No sequence available.

  • Chain 'T':
    No sequence available.

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >1pp8U (U:)
mdsndleasftsrlppeivaalkrkssrdpnsrfprklhmlltylasnpqleeeiglswi
sdtefkmkkknvalvmgiklntlnvnlrdlafeqlqhdkggwtqwkrsgftrnsvfedpt
qndspmhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp8U (U:)
dsndleasftsrlppeivaalkrkssrdpnsrfprklhmlltylasnpqleeeiglswis
dtefkmkkknvalvmgiklntlnvnlrdlafeqlqhdkggwtqwkrsgftr

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >1pp8V (V:)
mdsndleasftsrlppeivaalkrkssrdpnsrfprklhmlltylasnpqleeeiglswi
sdtefkmkkknvalvmgiklntlnvnlrdlafeqlqhdkggwtqwkrsgftrnsvfedpt
qndspmhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1pp8V (V:)
sftsrlppeivaalkrfprklhmlltylasnpqleeeiglswisdtefkmkkknvalvmg
iklntlnvnlrdlafeqlqhdkggwtqwkrsgftrnsv

  • Chain 'Y':
    No sequence available.