PDB entry 1pov

View 1pov on RCSB PDB site
Description: role and mechanism of the maturation cleavage of vp0 in poliovirus assembly: structure of the empty capsid assembly intermediate at 2.9 angstroms resolution
Class: Virus
Keywords: PICORNAVIRUS, Icosahedral virus, Virus
Deposited on 1995-08-10, released 1995-12-07
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.281
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: poliovirus native empty capsid (type 1)
    Species: Human poliovirus 1 [TaxId:12081]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1pov0_
  • Chain '1':
    Compound: poliovirus native empty capsid (type 1)
    Species: Human poliovirus 1 [TaxId:12081]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1pov1_
  • Chain '3':
    Compound: poliovirus native empty capsid (type 1)
    Species: Human poliovirus 1 [TaxId:12081]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03300 (0-237)
      • conflict (122)
    Domains in SCOPe 2.06: d1pov3_
  • Heterogens: MYR, SPH, HOH

PDB Chain Sequences:

  • Chain '0':
    Sequence, based on SEQRES records: (download) 
    >1pov0 (0:)
gaqvssqkvgahensnrayggstinyttinyyrdsasnaaskqdfsqdpskftepikdvl
iktapmlnspnieacgysdrvlqltlgnstittqeaansvvaygrwpeylrdseanpvdq
ptepdvaacrfytldtvswtkesrgwwwklpdalrdmglfgqnmyyhylgrsgytvhvqc
naskfhqgalgvfavpemclagdsntttmhtsyqnanpgekggtftgtftpdnnqtspar
rfcpvdyllgngtllgnafvfphqiinlrtnncatlvlpyvnslsidsmvkhnnwgiail
plaplnfasesspeipitltiapmccefnglrnitlprlq

    Sequence, based on observed residues (ATOM records): (download) 
    >1pov0 (0:)
gaqvssqkvgahinyttinyyrdsasnaaskqikdvliktapmlnspnieacgylqltlg
nstittqeaansvvaygrwpeylrdvaacrfytldtvswtkesrgwwwklpdalrdmglf
gqnmyyhylgrsgytvhvqcnaskfhqgalgvfavpemclagdsntttmhtsyqnanpge
kggtftgtftpdnnqtsparrfcpvdyllgngtllgnafvfphqiinlrtnncatlvlpy
vnslsidsmvkhnnwgiailplaplnfasesspeipitltiapmccefnglrnitlprlq

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >1pov1 (1:)
glgqmlesmidntvretvgaatsrdalpnteasgpthskeipaltavetgatnplvpsdt
vqtrhvvqhrsrsessiesffargacvtimtvdnpasttnkdklfavwkitykdtvqlrr
klefftysrfdmeltfvvtanftetnnghalnqvyqimyvppgapvpekwddytwqtssn
psifytygtaparisvpyvgisnayshfydgfskvplkdqsaalgdslygaaslndfgil
avrvvndhnptkvtskirvylkpkhirvwcprppravayygpgvdykdgtltplstkdlt
ty

    Sequence, based on observed residues (ATOM records): (download) 
    >1pov1 (1:)
qhrsrsessiesffargacvtimtvdnpasttnkdklfavwkitykdtvqlrrkleffty
srfdmeltfvvtanftetnnghalnqvyqimyvppgapvpekwddytwqtssnpsifyty
gtaparisvpyvgisnayshfydgfskvplkdqsaalgdslygaaslndfgilavrvvnd
hnptkvtskirvylkpkhirvwcprppravayygpgvdykdgtltplstkdltty

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pov3 (3:)
glpvmntpgsnqyltadnfqspcalpefdvtppidipgevknmmelaeidtmipfdlsat
kkntmemyrvrlsdkphtddpilclslspasdprlshtmlgeilnyythwagslkftflf
cgsmmatgkllvsyappgadppkkrkeamlgthviwdiglqssctmvvpwisnttyrqti
ddsfteggyisvfyqtrivvplstpremdilgfvsacndfsvrllrdtthieqkalaq