PDB entry 1ph1
View 1ph1 on RCSB PDB site
Description: crystal structure of the oxytricha nova telomere end-binding protein complexed with noncognate ssDNA ggggttttggggt
Class: DNA binding protein/DNA
Keywords: single strand DNA binding protein, protein DNA interactions, sequence specificity, noncognate, oligonucleotide and oligosaccharide binding fold, ob fold, telomeres, protein/DNA, DNA binding protein/DNA complex
Deposited on
2003-05-29, released
2003-06-17
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: 0.232
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Telomere-binding protein alpha subunit
Species: Sterkiella nova [TaxId:200597]
Gene: MAC-56A AND MAC-56K AND MAC-56S
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1ph1a1, d1ph1a2, d1ph1a3 - Chain 'B':
Compound: Telomere-binding protein beta subunit
Species: Sterkiella nova [TaxId:200597]
Gene: MAC-41A AND MAC-41S
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1ph1b_ - Chain 'D':
Compound: 5'-d(*gp*gp*gp*gp*tp*tp*tp*tp*gp*gp*gp*gp*t)-3'
- Chain 'G':
Compound: 5'-d(*gp*gp*gp*gp*tp*tp*tp*tp*gp*gp*gp*gp*t)-3'
- Chain 'H':
Compound: 5'-d(*gp*gp*gp*gp*tp*tp*tp*tp*gp*gp*gp*gp*t)-3'
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1ph1A (A:)
kyeyvelakasltsaqpqhfyavvidatfpyktnqeryicslkivdptlylkqqkgagda
sdyatlvlyakrfedlpiihragdiirvhratlrlyngqrqfnanvfyssswalfstdkr
svtqeinnqdavsdttpfsfsskhatiekneisilqnlrkwanqyfssysvissdmytal
nkaqaqkgdfdvvakilqvheldeytnelklkdasgqvfytlslklkfphvrtgevvrir
satydetstqkkvlilshysniitfiqssklakelrakiqddhsvevaslkknvslnavv
ltevdkkhaalpstslqdlfhhadsdkelqaqdtfrtqfyvtkiepsdvkewvkgydrkt
kkssslkgasgkgdnifqvqflvkdastqlnnntyrvllytqdglganffnvkadnlhkn
adarkkledsaelltkfnsyvdavverrngfylikdtkliy
Sequence, based on observed residues (ATOM records): (download)
>1ph1A (A:)
kyeyvelakasltsaqpqhfyavvidatfpyktnqeryicslkivdptlylkqdasdyat
lvlyakrfedlpiihragdiirvhratlrlyngqrqfnanvfyssswalfstdkrsvtqe
innqdavsdttpfsfsskhatiekneisilqnlrkwanqyfssysvissdmytalnkaqa
qkgdfdvvakilqvheldeytnelklkdasgqvfytlslklkfphvrtgevvrirsatyd
etstqkkvlilshysniitfiqssklakelrakiqddhsvevaslkknvslnavvltevd
kkhaalpstslqdlfhhadsdkelqaqdtfrtqfyvtkiepsdvkewvkgydrktkksss
lkgasgkgdnifqvqflvkdastqlnnntyrvllytqdglganffnvkadnlhknadark
kledsaelltkfnsyvdavverrngfylikdtkliy
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1ph1B (B:)
pqqqsafkqlytelfnnegdfskvssnlkkplkcyvkesyphflvtdgyffvapyftkea
vnefhakfpnvnivdltdkvivinnwslelrrvnsaevftsyanlearlivhsfkpnlqe
rlnptrypvnlfrddefkttiqhfrhtalqaainktvkgdnlvdiskvadaagkkgkvda
givkasaskgdefsdfsfkegntatlkiadifvqekg
- Chain 'D':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.