PDB entry 1pgs

View 1pgs on RCSB PDB site
Description: the three-dimensional structure of pngase f, a glycosylasparaginase from flavobacterium meningosepticum
Class: endoglycosidase
Keywords: endoglycosidase
Deposited on 1994-10-06, released 1995-01-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.168
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: peptide-n(4)-(n-acetyl-beta-d-glucosaminyl)asparagine amidase f
    Species: Elizabethkingia meningoseptica [TaxId:238]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21163 (Start-313)
      • conflict (244)
    Domains in SCOPe 2.08: d1pgsa1, d1pgsa2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1pgsA (A:)
apadntvniktfdkvknafgdglsqsaegtftfpadvttvktikmfiknecpnktcdewd
ryanvyvknkttgewyeigrfitpywvgteklprgleidvtdfksllsgntelkiytetw
lakgreysvdfdivygtpdykysavvpviqynkssidgvpygkahtlglkkniqlptnte
kaylrttisgwghakpydagsrgcaewcfrthtiainnantfqhqlgalgcsanpinnqs
pgnwtpdragwcpgmavptridvlnnsltgstfsyeykfqswtnngtngdafyaissfvi
aksntpisapvvtn

    Sequence, based on observed residues (ATOM records): (download) 
    >1pgsA (A:)
dntvniktfdkvknafgdglsqsaegtftfpadvttvktikmfiknecpnktcdewdrya
nvyvknkttgewyeigrfitpywvgteklprgleidvtdfksllsgntelkiytetwlak
greysvdfdivygtpdykysavvpviqynkssidgvpygkahtlglkkniqlptntekay
lrttisgwghakpydagsrgcaewcfrthtiainnantfqhqlgalgcsanpinnqspgn
wtpdragwcpgmavptridvlnnsltgstfsyeykfqswtnngtngdafyaissfviaks
ntpisapvvtn