PDB entry 1pgl

View 1pgl on RCSB PDB site
Description: bean pod mottle virus (bpmv), middle component
Class: Virus/RNA
Keywords: COMOVIRUS, VIRUS, VIRAL COAT PROTEIN, BEAN POD MOTTLE VIRUS (BPMV), Icosahedral virus, Virus/RNA COMPLEX
Deposited on 2003-05-28, released 2003-11-18
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-19.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.196
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: bean pod mottle virus small (s) subunit
    Species: Bean-pod mottle virus (strain Kentucky G7) [TaxId:31715]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pgl11
  • Chain '2':
    Compound: bean pod mottle virus large (l) subunit
    Species: Bean-pod mottle virus (strain Kentucky G7) [TaxId:31715]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1pgl21, d1pgl22
  • Chain '3':
    Compound: 5'-r(*ap*gp*up*cp*up*c)-3'
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pgl1 (1:)
sisqqtvwnqmatvrtplnfdsskqsfcqfsvdllgggisvdktgdwitlvqnspisnll
rvaawkkgclmvkvvmsgnaavkrsdwaslvqvfltnsnstehfdacrwtksephsweli
fpievcgpnngfemwssewanqtswhlsflvdnpkqsttfdvllgisqnfeiagntlmpa
fsvpq

  • Chain '2':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pgl2 (2:)
metnlfklslddvetpkgsmldlkisqskialpkntvggtilrsdllanfltegnfrasv
dlqrthrikgmikmvatvgipentgialacamnssirgrassdiyticsqdcelwnpact
kamtmsfnpnpcsdawsleflkrtgfhcdiicvtgwtatpmqdvqvtidwfissqecvpr
tycvlnpqnpfvlnrwmgkltfpqgtsrsvkrmplsigggagaksailmnmpnavlsmwr
yfvgdlvfevskmtspyikctvsffiafgnladdtinfeafphklvqfgeiqekvvlkfs
qeefltawstqvrpattlladgcpylyamvhdssvstipgdfvigvkltiienmcaygln
pgisgsrllg

  • Chain '3':
    No sequence available.