PDB entry 1pdm

View 1pdm on RCSB PDB site
Description: fitting of gp8 structure into the cryoem reconstruction of the bacteriophage t4 baseplate
Deposited on 2003-05-19, released 2003-09-09
The last revision prior to the SCOP 1.67 freeze date was dated 2003-09-09, with a file datestamp of 2003-09-09.
Experiment type: EM
Resolution: N/A
R-factor: N/A
AEROSPACI score: -0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Domains in SCOP 1.67: d1pdma_
  • Chain 'B':
    Domains in SCOP 1.67: d1pdmb_
  • Chain 'C':
    Domains in SCOP 1.67: d1pdmc_
  • Chain 'D':
    Domains in SCOP 1.67: d1pdmd_
  • Chain 'E':
    Domains in SCOP 1.67: d1pdme_
  • Chain 'F':
    Domains in SCOP 1.67: d1pdmf_
  • Chain 'G':
    Domains in SCOP 1.67: d1pdmg_
  • Chain 'H':
    Domains in SCOP 1.67: d1pdmh_
  • Chain 'I':
    Domains in SCOP 1.67: d1pdmi_
  • Chain 'J':
    Domains in SCOP 1.67: d1pdmj_
  • Chain 'K':
    Domains in SCOP 1.67: d1pdmk_
  • Chain 'L':
    Domains in SCOP 1.67: d1pdml_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1pdmA (A:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdmA (A:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1pdmB (B:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdmB (B:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1pdmC (C:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdmC (C:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1pdmD (D:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdmD (D:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1pdmE (E:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdmE (E:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1pdmF (F:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdmF (F:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1pdmG (G:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdmG (G:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1pdmH (H:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdmH (H:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1pdmI (I:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdmI (I:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1pdmJ (J:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdmJ (J:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1pdmK (K:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdmK (K:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >1pdmL (L:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdmL (L:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf