PDB entry 1pdl

View 1pdl on RCSB PDB site
Description: Fitting of gp5 in the cryoEM reconstruction of the bacteriophage T4 baseplate
Class: hydrolase
Keywords: hydrolase
Deposited on 2003-05-19, released 2003-09-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-07-18, with a file datestamp of 2018-07-13.
Experiment type: EM
Resolution: N/A
R-factor: N/A
AEROSPACI score: -0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tail-associated lysozyme
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1pdla_
  • Chain 'B':
    Compound: Tail-associated lysozyme
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1pdlb_
  • Chain 'C':
    Compound: Tail-associated lysozyme
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1pdlc_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1pdlA (A:)
memisnnlnwfvgvvedrmdplklgrvrvrvvglhppqraqgdvmgipteklpwmsviqp
itsaamsgiggsvtgpvegtrvyghfldkwktngivlgtyggivrekpnrlegfsdptgq
yprrlgndtnvlnqggevgydsssnviqdsnldtainpddrplseiptddnpnmsmaeml
rrdeglrlkvywdtegyptigighlimkqpvrdmaqinkvlskqvgreitgnpgsitmee
attlferdladmqrdikshskvgpvwqavnrsrqmalenmafqmgvggvakfntmltaml
agdwekaykagrdslwyqqtkgrasrvtmiiltgnlesygvevktparslsamaatvaks
sdpadppipndsrilfkepvssykgeypyvhtmetesghiqefddtpgqeryrlvhptgt
yeevspsgrrtrktvdnlyditnadgnflvagdkktnvggseiyynmdnrlhqidgsnti
fvrgdetktvegngtilvkgnvtiivegnaditvkgdattlvegnqtntvngnlswkvag
tvdwdvggdwtekmasmssissgqytidgsridig

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdlA (A:)
nnlnwfvgvvedrmdplklgrvrvrvvglhppqraqgdvmgipteklpwmsviqpitsaa
msgiggsvtgpvegtrvyghfldkwktngivlgtyggivrekpnrlegfsdptgqyprrl
gndtnvlnqggevgydsssnviqdsnldtainpddrplseiptddnpnmsmaemlrrdeg
lrlkvywdtegyptigighlimkqpvrdmaqinkvlskqvgreitgnpgsitmeeattlf
erdladmqrdikshskvgpvwqavnrsrqmalenmafqmgvggvakfntmltamlagdwe
kaykagrdslwyqqtkgrasrvtmiiltgnlesygvevktdpadppipndsrilfkepvs
sykgeypyvhtmetesghiqefddtpgqeryrlvhptgtyeevspsgrrtrktvdnlydi
tnadgnflvagdkktnvggseiyynmdnrlhqidgsntifvrgdetktvegngtilvkgn
vtiivegnaditvkgdattlvegnqtntvngnlswkvagtvdwdvggdwtekmasmssis
sgqytidgsridig

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1pdlB (B:)
memisnnlnwfvgvvedrmdplklgrvrvrvvglhppqraqgdvmgipteklpwmsviqp
itsaamsgiggsvtgpvegtrvyghfldkwktngivlgtyggivrekpnrlegfsdptgq
yprrlgndtnvlnqggevgydsssnviqdsnldtainpddrplseiptddnpnmsmaeml
rrdeglrlkvywdtegyptigighlimkqpvrdmaqinkvlskqvgreitgnpgsitmee
attlferdladmqrdikshskvgpvwqavnrsrqmalenmafqmgvggvakfntmltaml
agdwekaykagrdslwyqqtkgrasrvtmiiltgnlesygvevktparslsamaatvaks
sdpadppipndsrilfkepvssykgeypyvhtmetesghiqefddtpgqeryrlvhptgt
yeevspsgrrtrktvdnlyditnadgnflvagdkktnvggseiyynmdnrlhqidgsnti
fvrgdetktvegngtilvkgnvtiivegnaditvkgdattlvegnqtntvngnlswkvag
tvdwdvggdwtekmasmssissgqytidgsridig

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdlB (B:)
nnlnwfvgvvedrmdplklgrvrvrvvglhppqraqgdvmgipteklpwmsviqpitsaa
msgiggsvtgpvegtrvyghfldkwktngivlgtyggivrekpnrlegfsdptgqyprrl
gndtnvlnqggevgydsssnviqdsnldtainpddrplseiptddnpnmsmaemlrrdeg
lrlkvywdtegyptigighlimkqpvrdmaqinkvlskqvgreitgnpgsitmeeattlf
erdladmqrdikshskvgpvwqavnrsrqmalenmafqmgvggvakfntmltamlagdwe
kaykagrdslwyqqtkgrasrvtmiiltgnlesygvevktdpadppipndsrilfkepvs
sykgeypyvhtmetesghiqefddtpgqeryrlvhptgtyeevspsgrrtrktvdnlydi
tnadgnflvagdkktnvggseiyynmdnrlhqidgsntifvrgdetktvegngtilvkgn
vtiivegnaditvkgdattlvegnqtntvngnlswkvagtvdwdvggdwtekmasmssis
sgqytidgsridig

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1pdlC (C:)
memisnnlnwfvgvvedrmdplklgrvrvrvvglhppqraqgdvmgipteklpwmsviqp
itsaamsgiggsvtgpvegtrvyghfldkwktngivlgtyggivrekpnrlegfsdptgq
yprrlgndtnvlnqggevgydsssnviqdsnldtainpddrplseiptddnpnmsmaeml
rrdeglrlkvywdtegyptigighlimkqpvrdmaqinkvlskqvgreitgnpgsitmee
attlferdladmqrdikshskvgpvwqavnrsrqmalenmafqmgvggvakfntmltaml
agdwekaykagrdslwyqqtkgrasrvtmiiltgnlesygvevktparslsamaatvaks
sdpadppipndsrilfkepvssykgeypyvhtmetesghiqefddtpgqeryrlvhptgt
yeevspsgrrtrktvdnlyditnadgnflvagdkktnvggseiyynmdnrlhqidgsnti
fvrgdetktvegngtilvkgnvtiivegnaditvkgdattlvegnqtntvngnlswkvag
tvdwdvggdwtekmasmssissgqytidgsridig

    Sequence, based on observed residues (ATOM records): (download) 
    >1pdlC (C:)
nnlnwfvgvvedrmdplklgrvrvrvvglhppqraqgdvmgipteklpwmsviqpitsaa
msgiggsvtgpvegtrvyghfldkwktngivlgtyggivrekpnrlegfsdptgqyprrl
gndtnvlnqggevgydsssnviqdsnldtainpddrplseiptddnpnmsmaemlrrdeg
lrlkvywdtegyptigighlimkqpvrdmaqinkvlskqvgreitgnpgsitmeeattlf
erdladmqrdikshskvgpvwqavnrsrqmalenmafqmgvggvakfntmltamlagdwe
kaykagrdslwyqqtkgrasrvtmiiltgnlesygvevktdpadppipndsrilfkepvs
sykgeypyvhtmetesghiqefddtpgqeryrlvhptgtyeevspsgrrtrktvdnlydi
tnadgnflvagdkktnvggseiyynmdnrlhqidgsntifvrgdetktvegngtilvkgn
vtiivegnaditvkgdattlvegnqtntvngnlswkvagtvdwdvggdwtekmasmssis
sgqytidgsridig