PDB entry 1pdi

View 1pdi on RCSB PDB site
Description: Fitting of the C-terminal part of the short tail fibers into the cryo-EM reconstruction of T4 baseplate
Class: structural protein
Keywords: structural protein
Deposited on 2003-05-19, released 2003-09-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-07-18, with a file datestamp of 2018-07-13.
Experiment type: EM
Resolution: N/A
R-factor: N/A
AEROSPACI score: -0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdia_
  • Chain 'B':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdib_
  • Chain 'C':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdic_
  • Chain 'D':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdid_
  • Chain 'E':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdie_
  • Chain 'F':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdif_
  • Chain 'G':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdig_
  • Chain 'H':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdih_
  • Chain 'I':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdii_
  • Chain 'J':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdij_
  • Chain 'K':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdik_
  • Chain 'L':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdil_
  • Chain 'M':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdim_
  • Chain 'N':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdin_
  • Chain 'O':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdio_
  • Chain 'P':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdip_
  • Chain 'Q':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdiq_
  • Chain 'R':
    Compound: Short tail fiber protein
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10930 (0-277)
      • see remark 999 (39)
      • see remark 999 (45)
      • see remark 999 (47)
      • see remark 999 (53-54)
      • see remark 999 (56)
      • see remark 999 (60)
      • see remark 999 (70)
      • see remark 999 (79)
      • see remark 999 (81)
      • see remark 999 (136-137)
    Domains in SCOPe 2.08: d1pdir_

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiA (A:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiB (B:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiC (C:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiD (D:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiE (E:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiF (F:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiG (G:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiH (H:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiI (I:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiJ (J:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiK (K:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiL (L:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiM (M:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiN (N:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiO (O:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiP (P:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiQ (Q:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1pdiR (R:)
lngrgsttsmrgvvkltttagsqsggdassalawnadvihqrggqtingtlrinntltia
sgganitgtvnmtggyiqgkrvvtqneidrtipvgaimmwaadslpsdawrfchggtvsa
sdcplyasrigtryggsssnpglpdmrglfvrgsgrgshltnpnvngndqfgkprlgvgc
tggyvgevqiqqmsyhkhaggfgehddlgafgntrrsnfvgtrkgldwdnrsyftndgye
idpesqrnskytlnrpelignetrpwnislnyiikvke