PDB entry 1p86

View 1p86 on RCSB PDB site
Description: Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome
Class: ribosome
Keywords: EF-G.GTP-bound state, ratchet-like movement, real-space refinement, RIBOSOME
Deposited on 2003-05-06, released 2003-06-17
The last revision prior to the SCOPe 2.03 freeze date was dated 2012-02-15, with a file datestamp of 2012-02-10.
Experiment type: EM
Resolution: 11.5 Å
R-factor: N/A
AEROSPACI score: -0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: 23S ribosomal RNA
    Species: Escherichia coli [TaxId:562]
    Gene:
  • Chain '1':
    Compound: 50S ribosomal protein L33
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p861_
  • Chain '4':
    Compound: 50S ribosomal protein L36
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p864_
  • Chain '6':
    Compound: tRNA-PHE
    Species: Escherichia coli [TaxId:562]
    Gene:
  • Chain '9':
    Compound: 5S ribosomal RNA
    Species: Escherichia coli [TaxId:562]
    Gene:
  • Chain 'A':
    Compound: 50S ribosomal protein L2
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86a_
  • Chain 'B':
    Compound: 50S ribosomal protein L3
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86b_
  • Chain 'C':
    Compound: 50S ribosomal protein L4
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86c_
  • Chain 'D':
    Compound: 50S ribosomal protein L5
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86d_
  • Chain 'E':
    Compound: 50S ribosomal protein L6
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86e_
  • Chain 'F':
    Compound: 50S ribosomal protein L9
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86f_
  • Chain 'G':
    Compound: 50S ribosomal protein L11
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86g_
  • Chain 'H':
    Compound: 50S ribosomal protein L13
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86h_
  • Chain 'I':
    Compound: 50S ribosomal protein L14
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86i_
  • Chain 'J':
    Compound: 50S ribosomal protein L15
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86j_
  • Chain 'K':
    Compound: 50S ribosomal protein L16
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86k_
  • Chain 'L':
    Compound: 50S ribosomal protein L17
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86l_
  • Chain 'M':
    Compound: 50S ribosomal protein L18
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86m_
  • Chain 'N':
    Compound: 50S ribosomal protein L19
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86n_
  • Chain 'O':
    Compound: 50S ribosomal protein L20
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86o_
  • Chain 'Q':
    Compound: 50S ribosomal protein L22
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86q_
  • Chain 'R':
    Compound: 50S ribosomal protein L23
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86r_
  • Chain 'S':
    Compound: 50S ribosomal protein L24
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86s_
  • Chain 'T':
    Compound: 50S ribosomal protein L25
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86t_
  • Chain 'U':
    Compound: 50S ribosomal protein L27
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86u_
  • Chain 'W':
    Compound: 50S ribosomal protein L29
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86w_
  • Chain 'X':
    Compound: 50S ribosomal protein L30
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86x_
  • Chain 'Z':
    Compound: 50S ribosomal protein L32
    Species: Escherichia coli [TaxId:562]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1p86z_

PDB Chain Sequences:

  • Chain '0':
    No sequence available.

  • Chain '1':
    Sequence, based on SEQRES records: (download)
    >1p861 (1:)
    akgirekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeakik
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p861 (1:)
    akgirekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeak
    

  • Chain '4':
    Sequence, based on SEQRES records: (download)
    >1p864 (4:)
    mkvrasvkklcrnckivkrdgvirvicsaepkhkqrqg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p864 (4:)
    kvrasvkklcrnckivkrdgvirvicsaepkhkqrq
    

  • Chain '6':
    No sequence available.

  • Chain '9':
    No sequence available.

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1p86A (A:)
    avvkckptspgrrhvvkvvnpelhkgkpfaplleknsksggrnnngrittrhiggghkqa
    yrivdfkrnkdgipavverleydpnrsanialvlykdgerryilapkglkagdqiqsgvd
    aaikpgntlpmrnipvgstvhnvemkpgkggqlarsagtyvqivardgayvtlrlrsgem
    rkveadcratlgevgnaehmlrvlgkagaarwrgvrptvrgtamnpvdhphgggegrnfg
    khpvtpwgvqtkgkktrsnkrtdkfivrrrsk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86A (A:)
    ksggrnnngrittrhiggghkqayrivdfkrnkdgipavverleydpnrsanialvlykd
    gerryilapkglkagdqiqsgvdaaikpgntlpmrnipvgstvhnvemkpgkggqlarsa
    gtyvqivardgayvtlrlrsgemrkveadcratlgevgnaehmlrvlgkagaarwrgvrp
    tvrgtamnpvdhphgggegrnfgkhpvtpwgvqtkgkktrsnkrtdk
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1p86B (B:)
    miglvgkkvgmtriftedgvsipvtvieveanrvtqvkdlandgyraiqvttgakkanrv
    tkpeaghfakagveagrglwefrlaegeeftvgqsisvelfadvkkvdvtgtskgkgfag
    tvkrwnfrtqdathgnslshrvpgsigqnqtpgkvfkgkkmagqmgnervtvqsldvvrv
    daernlllvkgavpgatgsdlivkpavka
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86B (B:)
    miglvgkkvgmtriftedgvsipvtvieveanrvtqvkdlandgyraiqvttgakkanrv
    tkpeaghfakagveagrglwefrlaegeeftvgqsisvelfadvkkvdvtgtskervtvq
    sldvvrvdaernlllvkgavpgatgsdlivkpavka
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1p86C (C:)
    melvlkdaqsaltvsettfgrdfnealvhqvvvayaagarqgtraqktraevtgsgkkpw
    rqkgtgrarsgsikspiwrsggvtfaarpqdhsqkvnkkmyrgalksilselvrqdrliv
    vekfsveapktkllaqklkdmaledvliitgeldenlflaarnlhkvdvrdatgidpvsl
    iafdkvvmtadavkqveemla
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86C (C:)
    melvlkdaqsaltvsettfgrdfnealvhqvvvayaagarnkkmyrgalksilselvrqd
    rlivvekfsveapktkllaqklkdmaledvliitgeldenlflaarnlhkvdvrdatgid
    pvsliafdkvvmtadavkqvee
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1p86D (D:)
    aklhdyykdevvkklmtefnynsvmqvprvekitlnmgvgeaiadkklldnaaadlaais
    gqkplitkarksvagfkirqgypigckvtlrgermwefferlitiavprirdfrglsaks
    fdgrgnysmgvreqiifpeidydkvdrvrgldititttaksdeegrallaafdfpfrk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86D (D:)
    klhdyykdevvkklmtefnynsvmqvprvekitlnmgvgeaiadkklldnaaadlaaisg
    qkplitkarksvagfkirqgypigckvtlrgermwefferlitiavprirdfrglsaksf
    dgrgnysmgvreqiifpeidydkvdrvrgldititttaksdeegrallaafdfpfrk
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >1p86E (E:)
    srvakapvvvpagvdvkingqvitikgkngeltrtlndavevkhadntltfgprdgyadg
    waqagtarallnsmvigvtegftkklqlvgvgyraavkgnvinlslgfshpvdhqlpagi
    taecptqteivlkgadkqvigqvaadlrayrrpepykgkgvryadevvrtkeakkk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86E (E:)
    kapvvvpagvdvkingqvitikgkngeltrtlndavevkhadntltfgprdgyadgwaqa
    gtarallnsmvigvtegftkklqlvgvgyraavkgnvinlslgfshpvdhqlpagitaec
    ptqteivlkgadkqvigqvaadlrayrrpepykgkgvryadevvrtk
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1p86F (F:)
    mqvilldkvanlgslgdqvnvkagyarnflvpqgkavpatkknieffearraeleaklae
    vlaaanaraekinaletvtiaskagdegklfgsigtrdiadavtaagvevaksevrlpng
    vlrttgehevsfqvhsevfakvivnvvae
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >1p86G (G:)
    akkvqayvklqvaagmanpsppvgpalgqqgvnimefckafnaktdsiekglpipvvitv
    yadrsftfvtktppaavllkkaagiksgsgkpnkdkvgkisraqlqeiaqtkaadmtgad
    ieamtrsiegtarsmglvved
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86G (G:)
    kkvqayvklqvaagmanpsppvgpalgqqgvnimefckafnaktdsiekglpipvvitvy
    adrsftfvtktppaavllkkaagiksgsgkpnkdkvgkisraqlqeiaqtkaadmtgadi
    eamtrsiegtarsmglvve
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1p86H (H:)
    mktftakpetvkrdwyvvdatgktlgrlatelarrlrgkhkaeytphvdtgdyiivlnad
    kvavtgnkrtdkvyyhhtghiggikqatfeemiarrpervieiavkgmlpkgplgramfr
    klkvyagnehnhaaqqpqvldi
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >1p86I (I:)
    miqeqtmlnvadnsgarrvmcikvlggshrryagvgdiikitikeaiprgkvkkgdvlka
    vvvrtkkgvrrpdgsvirfdgnacvllnnnseqpigtrifgpvtrelrsekfmkiislap
    evl
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86I (I:)
    iqeqtmlnvadnsgarrvmcikvlggshrryagvgdiikitikeaiprgkvkkgdvlkav
    vvrtkkgvrrpdgsvirfdgnacvllnnnseqpigtrifgpvtrelrsekfmkiislape
    vl
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >1p86J (J:)
    mrlntlspaegskkagkrlgrgigsglgktggrghkgqksrsgggvrrgfeggqmplyrr
    lpkfgftsrkaaitaeirlsdlakveggvvdlntlkaaniigiqiefakvilagevttpv
    tvrglrvtkgaraaieaaggkiee
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86J (J:)
    taeirlsdlakveggvvdlntlkaaniigiqiefakvilagevttpvtvrglrvtkgara
    aieaaggkie
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >1p86K (K:)
    mlqpkrtkfrkmhkgrnrglaqgtdvsfgsfglkavgrgrltarqieaarramtravkrq
    gkiwirvfpdkpitekplavrmgkgkgnveywvaliqpgkvlyemdgvpeelareafkla
    aaklpikttfvtktvm
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86K (K:)
    qpkrtkfrkmhkgrnrglaqgtdvsfgsfglkavgrgrltarqieaarramtravkrqgk
    iwirvfpdkpitekplavrmgkgkgnveywvaliqpgkvlyemdgvpeelareafklaaa
    klpikttfvtk
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >1p86L (L:)
    mrhrksgrqlnrnsshrqamfrnmagslvrheiikttlpkakelrrvveplitlaktdsv
    anrrlafartrdneivaklfnelgprfasraggytrilkcgfragdnapmayielvdrse
    kaeaaae
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86L (L:)
    qamfrnmagslvrheiikttlpkakelrrvveplitlaktdsvanrrlafartrdneiva
    klfnelgprfasraggytrilkcgfragdnapmayielv
    

  • Chain 'M':
    Sequence, based on SEQRES records: (download)
    >1p86M (M:)
    mdkksarirratrarrklqelgatrlvvhrtprhiyaqviapngsevlvaastvekaiae
    qlkytgnkdaaaavgkavaeralekgikdvsfdrsgfqyhgrvqaladaareaglqf
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86M (M:)
    kksarirratrarrklqelgatrlvvhrtprhiyaqviapngsevlvaastvekaiaeql
    kytgnkdaaaavgkavaeralekgikdvsfdrsgfqyhgrvqaladaareagl
    

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1p86N (N:)
    sniikqleqeqmkqdvpsfrpgdtvevkvwvvegskkrlqafegvviairnrglhsaftv
    rkisngegvervfqthspvvdsisvkrrgavrkaklyylrertgkaarikerln
    

  • Chain 'O':
    Sequence, based on SEQRES records: (download)
    >1p86O (O:)
    arvkrgviararhkkilkqakgyygarsrvyrvafqavikagqyayrdrrqrkrqfrqlw
    iarinaaarqngisyskfinglkkasveidrkiladiavfdkvaftalvekakaala
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86O (O:)
    rrqrkrqfrqlwiarinaaarqngisyskfinglkkasveidrkiladiavfdkvaftal
    vekakaal
    

  • Chain 'Q':
    Sequence, based on SEQRES records: (download)
    >1p86Q (Q:)
    metiakhrharssaqkvrlvadlirgkkvsqaldiltytnkkaavlvkkvlesaianaeh
    ndgadiddlkvtkifvdegpsmkrimprakgradrilkrtshitvvvsdr
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86Q (Q:)
    akhrharssaqkvrlvadlirgkkvsqaldiltytnkkaavlvkkvlesaianaehndga
    diddlkvtkifvdegpsmkrimprakgradrilkrtshitvvvsdr
    

  • Chain 'R':
    Sequence, based on SEQRES records: (download)
    >1p86R (R:)
    mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevvnt
    lvvkgkvkrhgqrigrrsdwkkayvtlkegqnldfvggae
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86R (R:)
    llkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevvntlvkkay
    vtlkegqnldfvgg
    

  • Chain 'S':
    Sequence, based on SEQRES records: (download)
    >1p86S (S:)
    aakirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivek
    eaaiqvsnvaifnaatgkadrvgfrfedgkkvrffksnsetik
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86S (S:)
    kirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivekea
    aiqvsnvaifnaatgkadrvgfrfedgkkvrffksnset
    

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1p86T (T:)
    mftinaevrkeqgkgasrrlraankfpaiiyggkeaplaieldhdkvmnmqakaefysev
    ltivvdgkeikvkaqdvqrhpykpklqhidfvra
    

  • Chain 'U':
    Sequence, based on SEQRES records: (download)
    >1p86U (U:)
    ahkkaggstrngrdseakrlgvkrfggesvlagsiivrqrgtkfhaganvgcgrdhtlfa
    kadgkvkfevkgpknrkfisieae
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86U (U:)
    akrlgvkrfggesvlagsiivrqrgtkfhaganvgcgrdhtlfakadgkvkfevkgpknr
    kfisieae
    

  • Chain 'W':
    Sequence, based on SEQRES records: (download)
    >1p86W (W:)
    mkakelreksveelntellnllreqfnlrmqaasgqlqqshllkqvrrdvarvktllnek
    aga
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86W (W:)
    mkakelreksveelntellnllreqfnlrmqaasgqlqqshllkqvrrdvarvktllnek
    

  • Chain 'X':
    Sequence, based on SEQRES records: (download)
    >1p86X (X:)
    aktikitqtrsaigrlpkhkatllglglrrightveredtpairgminavsfmvkvee
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86X (X:)
    tikitqtrsaigrlpkhkatllglglrrightveredtpairgminavsfmvkvee
    

  • Chain 'Z':
    Sequence, based on SEQRES records: (download)
    >1p86Z (Z:)
    avqqnkptrskrgmrrshdaltavtslsvdktsgekhlrhhitadgyyrgrkviak
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p86Z (Z:)
    lsvdktsgekhlrhhitadgyyrgrkvia