PDB entry 1p7q

View 1p7q on RCSB PDB site
Description: Crystal Structure of HLA-A2 Bound to LIR-1, a Host and Viral MHC Receptor
Class: Immune system
Keywords: HLA-A2/Lir-1 Complex
Deposited on 2003-05-05, released 2003-10-14
The last revision prior to the SCOP 1.73 freeze date was dated 2003-10-14, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: 0.218
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class I histocompatibility antigen, A-2 alpha chain
    Species: HOMO SAPIENS
    Gene: HLA-A OR HLAA
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1p7qa1, d1p7qa2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: HOMO SAPIENS
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1p7qb_
  • Chain 'C':
    Compound: Pol polyprotein
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: leukocyte immunoglobulin-like receptor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1p7qd1, d1p7qd2

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1p7qA (A:)
    gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
    dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
    kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
    rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
    fqkwaavvvpsgqeqrytchvqheglpkpltlrwep
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1p7qB (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p7qB (B:)
    iqrtpkiqvysrhpaenflncyvsgfhpsdievdllkngeriekvehsdlsfskdwsfyl
    lyyteftptdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1p7qD (D:)
    hlpkptlwaepgsvitqgspvtlrcqggqetqeyrlyrekktapwitripqelvkkgqfp
    ipsitwehagryrcyygsdtagrsessdplelvvtgayikptlsaqpspvvnsggnvtlq
    cdsqvafdgfilckegedehpqclnsqphargssraifsvgpvspsrrwwyrcyaydsns
    pyewslpsdllellvlg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1p7qD (D:)
    pkptlwaepgsvitqgspvtlrcqtqeyrlyrekktapwitripqelvkkgqfpipsitw
    ehagryrcyyrsessdplelvvtgayikptlsaqpspvvnsggnvtlqcdsqvafdgfil
    ckegehpqclnsqphargssraifsvgpvspsrrwwyrcyaydsnspyewslpsdllell
    vlg