PDB entry 1p6v

View 1p6v on RCSB PDB site
Description: Crystal structure of the tRNA domain of transfer-messenger RNA in complex with SmpB
Class: RNA binding protein/RNA
Keywords: SmpB, tmRNA, trans-translation, protein-RNA complex
Deposited on 2003-04-30, released 2003-08-12
The last revision prior to the SCOP 1.73 freeze date was dated 2005-07-26, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.302
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SsrA-binding protein
    Species: Aquifex aeolicus
    Gene: SMPB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1p6va_
  • Chain 'B':
    Compound: 45-mer
    Species: synthetic, synthetic
  • Chain 'C':
    Compound: SsrA-binding protein
    Species: Aquifex aeolicus
    Gene: SMPB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1p6vc_
  • Chain 'D':
    Compound: 45-mer
    Species: synthetic, synthetic

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1p6vA (A:)
gksdkiipiaenkeakakydiletyeagivlkgsevkslrekgtvsfkdsfvriengeaw
lynlyiapykhatienhdplrkrklllhkreimrlygkvqekgytiiplklywknnkvkv
lialakgkklydrrrelkekamkrelerefkgkihl

    Sequence, based on observed residues (ATOM records): (download) 
    >1p6vA (A:)
sdkiipiaenkeakakydiletyeagivlkgsevkslrekgtvsfkdsfvriengeawly
nlyiapykhanhdplrkrklllhkreimrlygkvqekgytiiplklywknnkvkvliala
kgkkl

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1p6vC (C:)
gksdkiipiaenkeakakydiletyeagivlkgsevkslrekgtvsfkdsfvriengeaw
lynlyiapykhatienhdplrkrklllhkreimrlygkvqekgytiiplklywknnkvkv
lialakgkklydrrrelkekamkrelerefkgkihl

    Sequence, based on observed residues (ATOM records): (download) 
    >1p6vC (C:)
sdkiipiaenkeakakydiletyeagivlkgsevkslrekgtvsfkdsfvriengeawly
nlyiapykhanhdplrkrklllhkreimrlygkvqekgytiiplklywknnkvkvliala
kgkkl

  • Chain 'D':
    No sequence available.