PDB entry 1oyr

View 1oyr on RCSB PDB site
Description: Crystal structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis
Class: transferase
Keywords: Transferase, tRNA processing
Deposited on 2003-04-07, released 2004-03-09
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.278
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribonuclease PH
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1oyra1, d1oyra2
  • Chain 'B':
    Compound: Ribonuclease PH
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1oyrb1, d1oyrb2
  • Chain 'C':
    Compound: Ribonuclease PH
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1oyrc1, d1oyrc2
  • Chain 'D':
    Compound: Ribonuclease PH
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1oyrd1, d1oyrd2
  • Chain 'E':
    Compound: Ribonuclease PH
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1oyre1, d1oyre2
  • Chain 'F':
    Compound: Ribonuclease PH
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1oyrf1, d1oyrf2
  • Heterogens: SO4, CD

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1oyrA (A:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lpelk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oyrA (A:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1oyrB (B:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lpelk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oyrB (B:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1oyrC (C:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lpelk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oyrC (C:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1oyrD (D:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lpelk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oyrD (D:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1oyrE (E:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lpelk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oyrE (E:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1oyrF (F:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lpelk

    Sequence, based on observed residues (ATOM records): (download) 
    >1oyrF (F:)
mrhdgrqhdelrpitfdldfishpegsvlitagntkvicnasvedrvppflrgggkgwit
aeysmlpratnqrtiresskgkisgrtmeiqrligralravvdleklgertiwidcdviq
adggtrtasitgaflamaiaigklikagtiktnpitdflaaisvgidkeqgilldlnyee
dssaevdmnvimtgsgrfvelqgtgeeatfsredlngllglaekgiqelidkqkevlgds
lp