PDB entry 1oup

View 1oup on RCSB PDB site
Description: Crystal structure of the periplasmic endonuclease Vvn complexed with octamer double stranded DNA
Class: hydrolase/DNA
Keywords: Non-specific endonuclease, beta-beta-alpha metal motif, HYDROLASE-DNA COMPLEX
Deposited on 2003-03-25, released 2003-08-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-11, with a file datestamp of 2017-10-06.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nuclease
    Species: Vibrio vulnificus [TaxId:672]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8DCA6 (0-212)
      • engineered (61)
      • see remark 999 (144-147)
    Domains in SCOPe 2.08: d1oupa_
  • Chain 'B':
    Compound: Nuclease
    Species: Vibrio vulnificus [TaxId:672]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8DCA6 (0-End)
      • engineered (61)
      • see remark 999 (144-147)
    Domains in SCOPe 2.08: d1oupb_
  • Chain 'C':
    Compound: 5'-d(*gp*cp*gp*ap*tp*cp*gp*c)-3'
  • Chain 'D':
    Compound: 5'-d(*gp*cp*gp*ap*tp*cp*gp*c)-3'
  • Chain 'E':
    Compound: 5'-d(*gp*cp*gp*ap*tp*c)-3'
  • Chain 'F':
    Compound: 5'-d(*gp*cp*gp*ap*tp*cp*gp*c)-3'
  • Chain 'G':
    Compound: 5'-d(p*gp*c)-3'
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1oupA (A:)
appssfsaakqqavkiyqdhpisfycgcdiewqgkkgipnletcgyqvrkqqtrasriew
eavvpawqfghhrqcwqkggrkncskndqqfrlmeadlhnltpaigevngdrsnfnfsqw
ngvdgvsygrcemqvnfkqrkvmppdrargsiartylymsqeygfqlskqqqqlmqawnk
sypvdewectrddriakiqgnhnpfvqqscqtq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1oupB (B:)
appssfsaakqqavkiyqdhpisfycgcdiewqgkkgipnletcgyqvrkqqtrasriew
eavvpawqfghhrqcwqkggrkncskndqqfrlmeadlhnltpaigevngdrsnfnfsqw
ngvdgvsygrcemqvnfkqrkvmppdrargsiartylymsqeygfqlskqqqqlmqawnk
sypvdewectrddriakiqgnhnpfvqqscqtq

    Sequence, based on observed residues (ATOM records): (download) 
    >1oupB (B:)
appssfsaakqqavkiyqdhpisfycgcdiewqgkkgipnletcgyqvrkqqtrasriew
eavvpawqfghhrqcwqkggrkncskndqqfrlmeadlhnltpaigevngdrsnfnfsqw
ngvdgvsygrcemqvnfkqrkvmppdrargsiartylymsqeygfqlskqqqqlmqawnk
sypvdewectrddriakiqgnhnpfvqqsc

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.