PDB entry 1opo

View 1opo on RCSB PDB site
Description: the structure of carnation mottle virus
Class: Virus
Keywords: PLANT VIRUS, CARMOVIRUS, VIRUS/VIRAL PROTEIN, X-RAY DIFFRACTION, TOMATO BUSHY STUNT VIRUS, Icosahedral virus
Deposited on 2003-03-06, released 2003-04-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.183
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: coat protein
    Species: Carnation mottle virus [TaxId:11986]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1opoa_
  • Chain 'B':
    Compound: coat protein
    Species: Carnation mottle virus [TaxId:11986]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1opob_
  • Chain 'C':
    Compound: coat protein
    Species: Carnation mottle virus [TaxId:11986]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1opoc_
  • Heterogens: SO4, CA

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1opoA (A:)
menkgekiamnptvqtlaqkgdklavklvtrgwaslstnqkrraemlagytpailaftpr
rprmtnppprtsrnspgqagksmtmsktellstvkgttgvipsfedwvvsprnvavfpql
sllatnfnkyritaltvkyspacsfetngrvalgfnddasdtppttkvgfydlgkhveta
aqtakdlvipvdgktrfirdsasddaklvdfgrivlstygfdkadtvvgelfiqytivls
dptktakisqasndkvsdgptyvvpsvngnelqlrvvaagkwciivrgtveggftkptli
gpgisgdvdyesarpiavcelvtqmegqilkitktsaeqplqwvvyrm

    Sequence, based on observed residues (ATOM records): (download) 
    >1opoA (A:)
smtmsktellstvkgttgvipsfedwvvsprnvavfpqlsllatnfnkyritaltvkysp
acsfetngrvalgfnddasdtppttkvgfydlgkhvetaaqtakdlvipvdgktrfirds
asddaklvdfgrivlstygfdkadtvvgelfiqytivlsdptktakisqasndkvsdgpt
yvvpsvngnelqlrvvaagkwciivrgtveggftkptligpgisgdvdyesarpiavcel
vtqmegqilkitktsaeqplqwvvyrm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1opoB (B:)
menkgekiamnptvqtlaqkgdklavklvtrgwaslstnqkrraemlagytpailaftpr
rprmtnppprtsrnspgqagksmtmsktellstvkgttgvipsfedwvvsprnvavfpql
sllatnfnkyritaltvkyspacsfetngrvalgfnddasdtppttkvgfydlgkhveta
aqtakdlvipvdgktrfirdsasddaklvdfgrivlstygfdkadtvvgelfiqytivls
dptktakisqasndkvsdgptyvvpsvngnelqlrvvaagkwciivrgtveggftkptli
gpgisgdvdyesarpiavcelvtqmegqilkitktsaeqplqwvvyrm

    Sequence, based on observed residues (ATOM records): (download) 
    >1opoB (B:)
smtmsktellstvkgttgvipsfedwvvsprnvavfpqlsllatnfnkyritaltvkysp
acsfetngrvalgfnddasdtppttkvgfydlgkhvetaaqtakdlvipvdgktrfirds
asddaklvdfgrivlstygfdkadtvvgelfiqytivlsdptktakisqasndkvsdgpt
yvvpsvngnelqlrvvaagkwciivrgtveggftkptligpgisgdvdyesarpiavcel
vtqmegqilkitktsaeqplqwvvyrm

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1opoC (C:)
menkgekiamnptvqtlaqkgdklavklvtrgwaslstnqkrraemlagytpailaftpr
rprmtnppprtsrnspgqagksmtmsktellstvkgttgvipsfedwvvsprnvavfpql
sllatnfnkyritaltvkyspacsfetngrvalgfnddasdtppttkvgfydlgkhveta
aqtakdlvipvdgktrfirdsasddaklvdfgrivlstygfdkadtvvgelfiqytivls
dptktakisqasndkvsdgptyvvpsvngnelqlrvvaagkwciivrgtveggftkptli
gpgisgdvdyesarpiavcelvtqmegqilkitktsaeqplqwvvyrm

    Sequence, based on observed residues (ATOM records): (download) 
    >1opoC (C:)
ksmtmsktellstvkgttgvipsfedwvvsprnvavfpqlsllatnfnkyritaltvkys
pacsfetngrvalgfnddasdtppttkvgfydlgkhvetaaqtakdlvipvdgktrfird
sasddaklvdfgrivlstygfdkadtvvgelfiqytivlsdptktakisqasndkvsdgp
tyvvpsvngnelqlrvvaagkwciivrgtveggftkptligpgisgdvdyesarpiavce
lvtqmegqilkitktsaeqplqwvvyrm