PDB entry 1oop

View 1oop on RCSB PDB site
Description: The Crystal Structure of Swine Vesicular Disease Virus
Class: Virus
Keywords: PICORNAVIRUS STRUCTURE, VIRUS/VIRAL PROTEIN, VIRUS-RECEPTOR INTERACTIONS, HOST ADAPTATION, CAR, DAF, COXSACKIEVIRUS, X-RAY DIFFRACTION, Icosahedral virus
Deposited on 2003-03-04, released 2003-04-22
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.245
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: coat protein vp1
    Species: Swine vesicular disease virus (STRAIN UKG/27/72) [TaxId:12077]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P13900 (Start-282)
      • conflict (79)
      • conflict (181)
    Domains in SCOPe 2.02: d1oopa_
  • Chain 'B':
    Compound: coat protein vp2
    Species: Swine vesicular disease virus (STRAIN UKG/27/72) [TaxId:12077]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1oop.1
  • Chain 'C':
    Compound: coat protein vp3
    Species: Swine vesicular disease virus (STRAIN UKG/27/72) [TaxId:12077]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1oopc_
  • Chain 'D':
    Compound: coat protein vp4
    Species: Swine vesicular disease virus (STRAIN UKG/27/72) [TaxId:12077]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1oop.1
  • Heterogens: MYR, SPH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1oopA (A:)
gppgevmgraiarvadtigsgpvnsesipaltaaetghtsqvvpsdtmqtrhvknyhsrs
estvenflcrsacvfyttyenhdsdgdnfaywvintrqvaqlrrklemftyarfdleltf
vitstqeqptvrgqdapvlthqimyvppggpvptkvnsyswqtstnpsvfwtegsapprm
svpfigignaysmfydgwarfdkqgtygistlnnmgtlymrhvndggpgpivstvriyfk
pkhvktwvprpprlcqyqkagnvnfeptgvtegrtdittmktt

    Sequence, based on observed residues (ATOM records): (download) 
    >1oopA (A:)
rvadtigsgpvnsesipaltaaetghtsqvvpsdtmqtrhvknyhsrsestvenflcrsa
cvfyttyenhdsdgdnfaywvintrqvaqlrrklemftyarfdleltfvitstqeqptvr
gqdapvlthqimyvppggpvptkvnsyswqtstnpsvfwtegsapprmsvpfigignays
mfydgwarfdkqgtygistlnnmgtlymrhvndggpgpivstvriyfkpkhvktwvprpp
rlcqyqkagnvnfeptgvtegrtdittmktt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1oopB (B:)
spsaeecgysdrvrsitlgnstittqecanvvvgygvwptylkdeeataedqptqpdvat
crfytlesvmwqqsspgwwwkfpdalsnmglfgqnmqyhylgragytihvqcnaskfhqg
cllvvcvpeaemgcatlankpdpkslskgeianmfesqnstgetavqanvinagmgvgvg
nltifphqwinlrtnnsativmpyinsvpmdnmfrhnnftlmvipfaplsystgattyvp
itvtvapmcaeynglrlagkq

    Sequence, based on observed residues (ATOM records): (download) 
    >1oopB (B:)
sdrvrsitlgnstittqecanvvvgygvwptylkdeeataedqptqpdvatcrfytlesv
mwqqsspgwwwkfpdalsnmglfgqnmqyhylgragytihvqcnaskfhqgcllvvcvpe
aemgcatlankpdpkslskgeianmfesqnstgetavqanvinagmgvgvgnltifphqw
inlrtnnsativmpyinsvpmdnmfrhnnftlmvipfaplsystgattyvpitvtvapmc
aeynglrlagkq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1oopC (C:)
glptlstpgsnqfltsddfqspsampqfdvtpemdipgqvnnlmeiaevdsvvpvnnteg
kvmsieayqipvqsnptngsqvfgfpltpgansvlnrtllgeilnyyahwsgsikltfmf
cgsamatgkfllaysppgagapttrkeamlgthviwdvglqsscvlcipwisqthyryvv
mdeytaggyitcwyqtnivvpadaqsdckilcfvsacndfsvrmlkdtpfikqdnffq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1oopD (D:)
mgaqvstqktgahetslsaagnsvihytninyykdaasnsanrqdftqdpgkftepvkdi
mvksmpaln

    Sequence, based on observed residues (ATOM records): (download) 
    >1oopD (D:)
gaqvstqktgaheihytninyykdaasnsanrqdftqdpgkftepvkdimvksmpaln