PDB entry 1ond
View 1ond on RCSB PDB site
Description: the crystal structure of the 50s large ribosomal subunit from deinococcus radiodurans complexed with troleandomycin macrolide antibiotic
Class: ribosome
Keywords: ribosomes, tRNA, macrolide, antibiotic, exit-tunnel l22, blockage
Deposited on
2003-02-27, released
2003-04-15
The last revision prior to the SCOPe 2.07 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: 0.261
AEROSPACI score: 0.03
(click here for full SPACI score report)
Chains and heterogens:
- Chain '0':
Compound: 23S ribosomal RNA
Species: Deinococcus radiodurans [TaxId:1299]
- Chain 'Q':
Compound: 50S ribosomal protein L22
Species: Deinococcus radiodurans [TaxId:1299]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1ondq_ - Chain 'Z':
Compound: 50S ribosomal protein L32
Species: Deinococcus radiodurans [TaxId:1299]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1ondz_ - Heterogens: TAO
PDB Chain Sequences:
- Chain '0':
No sequence available.
- Chain 'Q':
Sequence, based on SEQRES records: (download)
>1ondQ (Q:)
mtapeqtfrnkkqrkqqvklrkpgfavakyvrmsprkvrlvvdvirgksvqdaedllrfi
prsasepvakvlnsakanalhndemledrlfvkeayvdagptlkrliprargsaniikkr
tshitiivaekgnk
Sequence, based on observed residues (ATOM records): (download)
>1ondQ (Q:)
eqtfrnkkqrkqqvklrkpgfavakyvrmsprkvrlvvdvirgksvqdaedllrfiprsa
sepvakvlnsakanalhndemledrlfvkeayvdagptlkrliprargsaniikkrtshi
tiivaekgnk
- Chain 'Z':
Sequence, based on SEQRES records: (download)
>1ondZ (Z:)
makhpvpkkktskskrdmrrshhaltapnltecpqchgkklshhicpncgyydgrqvlav
Sequence, based on observed residues (ATOM records): (download)
>1ondZ (Z:)
akhpvpkkktskskrdmrrshhaltapnltecpqchgkklshhicpncgyydgrqvla