PDB entry 1om9

View 1om9 on RCSB PDB site
Description: Structure of the GGA1-appendage in complex with the p56 binding peptide
Class: protein transport, signaling protein
Keywords: beta sandwich, beta augmentation, GGA, adaptin, clathrin adaptor, PROTEIN TRANSPORT, SIGNALING PROTEIN
Deposited on 2003-02-25, released 2003-07-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-19.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.216
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ADP-ribosylation factor binding protein GGA1
    Species: Homo sapiens [TaxId:9606]
    Gene: GGA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1om9a_
  • Chain 'B':
    Compound: ADP-ribosylation factor binding protein GGA1
    Species: Homo sapiens [TaxId:9606]
    Gene: GGA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1om9b_
  • Chain 'P':
    Compound: 15-mer peptide fragment of p56
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 1OM9
  • Chain 'Q':
    Compound: 15-mer peptide fragment of p56
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 1OM9
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1om9A (A:)
mhhhhhhmelslasitvplesikpsnilpvtvydqhgfrilfhfardplpgrsdvlvvvv
smlstapqpirnivfqsavpkvmkvklqppsgtelpafnpivhpsaitqvlllanpqkek
vrlrykltftmgdqtynemgdvdqfpppetwgsl

    Sequence, based on observed residues (ATOM records): (download) 
    >1om9A (A:)
asitvplesikpsnilpvtvydqhgfrilfhfardplpgrsdvlvvvvsmlstapqpirn
ivfqsavpkvmkvklqppsgtelpafnpivhpsaitqvlllanpqkekvrlrykltftmg
dqtynemgdvdqfpppetwgsl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1om9B (B:)
mhhhhhhmelslasitvplesikpsnilpvtvydqhgfrilfhfardplpgrsdvlvvvv
smlstapqpirnivfqsavpkvmkvklqppsgtelpafnpivhpsaitqvlllanpqkek
vrlrykltftmgdqtynemgdvdqfpppetwgsl

    Sequence, based on observed residues (ATOM records): (download) 
    >1om9B (B:)
asitvplesikpsnilpvtvydqhgfrilfhfardplpgrsdvlvvvvsmlstapqpirn
ivfqsavpkvmkvklqppsgtelpafnpivhpsaitqvlllanpqkekvrlrykltftmg
dqtynemgdvdqfpppetwgsl

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.