PDB entry 1olm

View 1olm on RCSB PDB site
Description: supernatant protein factor in complex with rrr-alpha-tocopherylquinone: a link between oxidized vitamin e and cholesterol biosynthesis
Class: lipid-binding protein
Keywords: lipid-binding protein, cholesterol biosynthesis, oxidized vitamin e, lipid-binding, transport, transcription regulation, activator
Deposited on 2003-08-08, released 2004-08-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.181
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: sec14-like protein 2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O76054 (0-End)
      • conflict (321)
    Domains in SCOPe 2.07: d1olma1, d1olma2, d1olma3
  • Chain 'C':
    Compound: sec14-like protein 2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O76054 (0-End)
      • conflict (321)
    Domains in SCOPe 2.07: d1olmc1, d1olmc2, d1olmc3
  • Chain 'E':
    Compound: sec14-like protein 2
    Species: Homo sapiens [TaxId:9606]
    Domains in SCOPe 2.07: d1olme1, d1olme2, d1olme3
  • Heterogens: VTQ, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1olmA (A:)
    msgrvgdlsprqkealakfrenvqdvlpalpnpddyfllrwlrarsfdlqkseamlrkhv
    efrkqkdidniiswqppeviqqylsggmcgydldgcpvwydiigpldakgllfsaskqdl
    lrtkmrecelllqecahqttklgrkvetitiiydceglglkhlwkpaveaygeflcmfee
    nypetlkrlfvvkapklfpvaynlikpflsedtrkkimvlganwkevllkhispdqvpve
    yggtmtdpdgnpkckskinyggdiprkyyvrdqvkqqyehsvqisrgsshqveyeilfpg
    cvlrwqfmsdgadvgfgiflktkmgerqragemtevlpnqrynshlvpedgtltcsdpgi
    yvlrfdntysfihakkvnftvevllpdkaseekmkqlgagtpk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1olmA (A:)
    msgrvgdlsprqkealakfrenvqdvlpalpnpddyfllrwlrarsfdlqkseamlrkhv
    efrkqkdidniiswqppeviqqylsggmcgydldgcpvwydiigpldakgllfsaskqdl
    lrtkmrecelllqecahqttklgrkvetitiiydceglglkhlwkpaveaygeflcmfee
    nypetlkrlfvvkapklfpvaynlikpflsedtrkkimvlganwkevllkhispdqvpve
    yggtmtdpdgnpkckskinyggdiprkyyvrdqvkqqyehsvqisrgsshqveyeilfpg
    cvlrwqfmsdgadvgfgiflkterqragemtevlpnqrynshlvpedgtltcsdpgiyvl
    rfdntysfihakkvnftvevllpdkaseekmkqlg
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1olmC (C:)
    msgrvgdlsprqkealakfrenvqdvlpalpnpddyfllrwlrarsfdlqkseamlrkhv
    efrkqkdidniiswqppeviqqylsggmcgydldgcpvwydiigpldakgllfsaskqdl
    lrtkmrecelllqecahqttklgrkvetitiiydceglglkhlwkpaveaygeflcmfee
    nypetlkrlfvvkapklfpvaynlikpflsedtrkkimvlganwkevllkhispdqvpve
    yggtmtdpdgnpkckskinyggdiprkyyvrdqvkqqyehsvqisrgsshqveyeilfpg
    cvlrwqfmsdgadvgfgiflktkmgerqragemtevlpnqrynshlvpedgtltcsdpgi
    yvlrfdntysfihakkvnftvevllpdkaseekmkqlgagtpk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1olmC (C:)
    msgrvgdlsprqkealakfrenvqdvlpalpnpddyfllrwlrarsfdlqkseamlrkhv
    efrkqkdidniiswqppeviqqylsggmcgydldgcpvwydiigpldakgllfsaskqdl
    lrtkmrecelllqecahqttklgrkvetitiiydceglglkhlwkpaveaygeflcmfee
    nypetlkrlfvvkapklfpvaynlikpflsedtrkkimvlganwkevllkhispdqvpve
    yggtmtdpdgnpkckskinyggdiprkyyvrdqvkqqyehsvqisrgsshqveyeilfpg
    cvlrwqfmsdgadvgfgiflktkemtevlpnqrynshlvpedgtltcsdpgiyvlrfdnt
    ysfihakkvnftvevllpdkaseek
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >1olmE (E:)
    msgrvgdlsprqkealakfrenvqdvlpalpnpddyfllrwlrarsfdlqkseamlrkhv
    efrkqkdidniiswqppeviqqylsggmcgydldgcpvwydiigpldakgllfsaskqdl
    lrtkmrecelllqecahqttklgrkvetitiiydceglglkhlwkpaveaygeflcmfee
    nypetlkrlfvvkapklfpvaynlikpflsedtrkkimvlganwkevllkhispdqvpve
    yggtmtdpdgnpkckskinyggdiprkyyvrdqvkqqyehsvqisrgsshqveyeilfpg
    cvlrwqfmsdgadvgfgiflkkkmgerqragemtevlpnqrynshlvpedgtltcsdpgi
    yvlrfdntysfihakkvnftvevllpdkaseekmkqlgagtpk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1olmE (E:)
    msgrvgdlsprqkealakfrenvqdvlpalpnpddyfllrwlrarsfdlqkseamlrkhv
    efrkqkdidniiswqppeviqqylsggmcgydldgcpvwydiigpldakgllfsaskqdl
    lrtkmrecelllqecahqttklgrkvetitiiydceglglkhlwkpaveaygeflcmfee
    nypetlkrlfvvkapklfpvaynlikpflsedtrkkimvlganwkevllkhispdqvpve
    yggtmtdpdgnpkckskinyggdiprkyyvrdqvkqqyehsvqisrgsshqveyeilfpg
    cvlrwqfmsdgadvgfgiflkkkmgerqragemtevlpnqrynshlvpedgtltcsdpgi
    yvlrfdntysfihakkvnftvevllpdkaseekmkql