PDB entry 1oke

View 1oke on RCSB PDB site
Description: crystal structure of the dengue 2 virus envelope protein in complex with n-octyl-beta-d-glucoside
Class: Viral protein
Keywords: dengue virus, membrane fusion, flavivirus, fusion peptide, low-ph conformational change, trimer, class 2 fusion protein, virus/viral protein
Deposited on 2003-07-22, released 2003-07-24
The last revision prior to the SCOP 1.73 freeze date was dated 2003-07-24, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.0795
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: major envelope protein E
    Species: DENGUE VIRUS TYPE 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12823 (0-393)
      • conflict (70)
      • conflict (389)
    Domains in SCOP 1.73: d1okea1, d1okea2
  • Chain 'B':
    Compound: major envelope protein E
    Species: DENGUE VIRUS TYPE 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12823 (0-393)
      • conflict (70)
      • conflict (389)
    Domains in SCOP 1.73: d1okeb1, d1okeb2
  • Heterogens: NAG, BOG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1okeA (A:)
mrcigisnrdfvegvsggswvdivlehgscvttmaknkptldfelikteakqpatlrkyc
ieakltntttesrcptqgeptlneeqdkrfvckhsmvdrgwgngcglfgkggivtcamft
ckknmegkivqpenleytvvitphsgeehavgndtgkhgkevkitpqssiteaeltgygt
vtmecsprtgldfnemvllqmkdkawlvhrqwfldlplpwlpgadtqgsnwiqketlvtf
knphakkqdvvvlgsqegamhtaltgateiqmssgnllftghlkcrlrmdklqlkgmsys
mctgkfkvvkeiaetqhgtivirvqyegdgspckipfeimdlekrhvlgrlitvnpivte
kdspvnieaeppfgdsyiiigvepgqlklnwfkk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1okeB (B:)
mrcigisnrdfvegvsggswvdivlehgscvttmaknkptldfelikteakqpatlrkyc
ieakltntttesrcptqgeptlneeqdkrfvckhsmvdrgwgngcglfgkggivtcamft
ckknmegkivqpenleytvvitphsgeehavgndtgkhgkevkitpqssiteaeltgygt
vtmecsprtgldfnemvllqmkdkawlvhrqwfldlplpwlpgadtqgsnwiqketlvtf
knphakkqdvvvlgsqegamhtaltgateiqmssgnllftghlkcrlrmdklqlkgmsys
mctgkfkvvkeiaetqhgtivirvqyegdgspckipfeimdlekrhvlgrlitvnpivte
kdspvnieaeppfgdsyiiigvepgqlklnwfkk