PDB entry 1ok8

View 1ok8 on RCSB PDB site
Description: crystal structure of the dengue 2 virus envelope glycoprotein in the postfusion conformation
Class: Viral protein
Keywords: dengue virus, membrane fusion, flavivirus, fusion peptide, low-ph conformational change, trimer, class 2 fusion protein,
Deposited on 2003-07-19, released 2004-01-29
The last revision prior to the SCOP 1.75 freeze date was dated 2004-01-29, with a file datestamp of 2007-07-20.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.222
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: major envelope protein E
    Species: Dengue virus type 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12823 (0-393)
      • conflict (70)
      • conflict (389)
    Domains in SCOP 1.75: d1ok8a1, d1ok8a2
  • Heterogens: NAG, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ok8A (A:)
mrcigisnrdfvegvsggswvdivlehgscvttmaknkptldfelikteakqpatlrkyc
ieakltntttesrcptqgeptlneeqdkrfvckhsmvdrgwgngcglfgkggivtcamft
ckknmegkivqpenleytvvitphsgeehavgndtgkhgkevkitpqssiteaeltgygt
vtmecsprtgldfnemvllqmkdkawlvhrqwfldlplpwlpgadtqgsnwiqketlvtf
knphakkqdvvvlgsqegamhtaltgateiqmssgnllftghlkcrlrmdklqlkgmsys
mctgkfkvvkeiaetqhgtivirvqyegdgspckipfeimdlekrhvlgrlitvnpivte
kdspvnieaeppfgdsyiiigvepgqlklnwfkk

    Sequence, based on observed residues (ATOM records): (download) 
    >1ok8A (A:)
mrcigisnrdfvegvsggswvdivlehgscvttmaknkptldfelikteakqpatlrkyc
ieakltntttesrcptqgeptlneeqdkrfvckhsmvdrgwgngcglfgkggivtcamft
ckknmegkivqpenleytvvitphgkevkitpqssiteaeltgygtvtmecsprtgldfn
emvllqmkdkawlvhrqwfldlplpwlpgadtqgsnwiqketlvtfknphakkqdvvvlg
sqegamhtaltgateiqmssgnllftghlkcrlrmdklqlkgmsysmctgkfkvvkeiae
tqhgtivirvqyegdgspckipfeimdlekrhvlgrlitvnpivtekdspvnieaeppfg
dsyiiigvepgqlklnwfkk