PDB entry 1ojy

View 1ojy on RCSB PDB site
Description: Decay accelerating factor (cd55): the structure of an intact human complement regulator.
Class: regulator of complement pathway
Keywords: regulator of complement pathway, regulator of complement, decay acceleration of c3/c5 convertases, pathogen receptor, short consensus repeat domains, plasma, glycoprotein, membrane, gpi-anchor
Deposited on 2003-07-16, released 2004-01-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-09-21, with a file datestamp of 2016-09-16.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: complement decay-accelerating factor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 1OJY
      • see remark 999 (47)
    • Uniprot P08174 (2-252)
    Domains in SCOPe 2.07: d1ojya1, d1ojya2, d1ojya3, d1ojya4
  • Chain 'B':
    Compound: complement decay-accelerating factor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 1OJY (253-253)
      • see remark 999 (47)
    • Uniprot P08174 (2-252)
    Domains in SCOPe 2.07: d1ojyb1, d1ojyb2, d1ojyb3, d1ojyb4
  • Chain 'C':
    Compound: complement decay-accelerating factor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 1OJY
      • see remark 999 (47)
    • Uniprot P08174 (2-252)
    Domains in SCOPe 2.07: d1ojyc1, d1ojyc2, d1ojyc3, d1ojyc4
  • Chain 'D':
    Compound: complement decay-accelerating factor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 1OJY (253-253)
      • see remark 999 (47)
    • Uniprot P08174 (2-252)
    Domains in SCOPe 2.07: d1ojyd1, d1ojyd2, d1ojyd3, d1ojyd4
  • Heterogens: ACT, GOL, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ojyA (A:)
mqdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsdiee
fcnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkws
tavefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvq
wsdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnd
egewsgpppecrgc

    Sequence, based on observed residues (ATOM records): (download) 
    >1ojyA (A:)
qdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsdieef
cnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkwst
avefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvqw
sdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnde
gewsgpppecrg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ojyB (B:)
mqdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsdiee
fcnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkws
tavefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvq
wsdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnd
egewsgpppecrgc

    Sequence, based on observed residues (ATOM records): (download) 
    >1ojyB (B:)
qdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsdieef
cnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkwst
avefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvqw
sdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnde
gewsgpppecrgc

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1ojyC (C:)
mqdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsdiee
fcnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkws
tavefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvq
wsdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnd
egewsgpppecrgc

    Sequence, based on observed residues (ATOM records): (download) 
    >1ojyC (C:)
mqdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsdiee
fcnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkws
tavefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvq
wsdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnd
egewsgpppecrg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1ojyD (D:)
mqdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsdiee
fcnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkws
tavefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvq
wsdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnd
egewsgpppecrgc

    Sequence, based on observed residues (ATOM records): (download) 
    >1ojyD (D:)
qdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsdieef
cnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkwst
avefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvqw
sdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnde
gewsgpppecrgc