PDB entry 1ogd

View 1ogd on RCSB PDB site
Description: The Structure of Bacillus subtilis RbsD complexed with D-ribose
Class: transport
Keywords: ribose, transport, sugar transport
Deposited on 2003-04-30, released 2003-09-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: high affinity ribose transport protein rbsd
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ogda_
  • Chain 'B':
    Compound: high affinity ribose transport protein rbsd
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ogdb_
  • Chain 'C':
    Compound: high affinity ribose transport protein rbsd
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ogdc_
  • Chain 'D':
    Compound: high affinity ribose transport protein rbsd
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ogdd_
  • Chain 'E':
    Compound: high affinity ribose transport protein rbsd
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ogde_
  • Heterogens: CL, RIP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ogdA (A:)
mkkhgilnshlakiladlghtdkiviadaglpvpdgvlkidlslkpglpafqdtaavlae
emavekviaaaeikasnqenakflenlfseqeieylsheefklltkdakavirtgeftpy
ancilqagvlf

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ogdB (B:)
mkkhgilnshlakiladlghtdkiviadaglpvpdgvlkidlslkpglpafqdtaavlae
emavekviaaaeikasnqenakflenlfseqeieylsheefklltkdakavirtgeftpy
ancilqagvlf

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ogdC (C:)
mkkhgilnshlakiladlghtdkiviadaglpvpdgvlkidlslkpglpafqdtaavlae
emavekviaaaeikasnqenakflenlfseqeieylsheefklltkdakavirtgeftpy
ancilqagvlf

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ogdD (D:)
mkkhgilnshlakiladlghtdkiviadaglpvpdgvlkidlslkpglpafqdtaavlae
emavekviaaaeikasnqenakflenlfseqeieylsheefklltkdakavirtgeftpy
ancilqagvlf

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ogdE (E:)
mkkhgilnshlakiladlghtdkiviadaglpvpdgvlkidlslkpglpafqdtaavlae
emavekviaaaeikasnqenakflenlfseqeieylsheefklltkdakavirtgeftpy
ancilqagvlf