PDB entry 1oga
View 1oga on RCSB PDB site
Description: a structural basis for immunodominant human T-cell receptor recognition.
Class: immune system/receptor
Keywords: immune system/receptor, immune system/receptor/complex, tcr, MHC, immunodominance, flu, complex, peptide, transmembrane, glycoprotein, signal, polymorphism, T-cell, receptor
Deposited on
2003-04-28, released
2003-06-19
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: 0.218
AEROSPACI score: 0.64
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hla class I histocompatibility antigen
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1ogaa1, d1ogaa2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 1OGA
- Uniprot P01884 (1-99)
Domains in SCOPe 2.08: d1ogab1, d1ogab2 - Chain 'C':
Compound: gilgfvftl
Species: HOMO SAPIENS, synthetic [TaxId:9606]
- Chain 'D':
Compound: T-cell receptor alpha chain v region
Species: Homo sapiens [TaxId:9606]
Domains in SCOPe 2.08: d1ogad1, d1ogad2 - Chain 'E':
Compound: T-cell receptor beta chain c region
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1ogae1, d1ogae2, d1ogae3 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1ogaA (A:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrwep
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1ogaB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1ogaD (D:)
mqlleqspqflsiqegenltvycnsssvfsslqwyrqepgegpvllvtvvtggevkklkr
ltfqfgdarkdsslhitaaqpgdtglylcagagsqgnlifgkgtklsvkpniqnpdpavy
qlrdskssdksvclftdfdsqtnvsqskdsdvyitdktvldmrsmdfksnsavawsnksd
facanafnnsiipedtffpspendgggckhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1ogaD (D:)
qlleqspqflsiqegenltvycnsssvfsslqwyrqepgegpvllvtvvtggevkklkrl
tfqfgdarkdsslhitaaqpgdtglylcagagsqgnlifgkgtklsvkpniqnpdpavyq
lrdskssdksvclftdfdsqtnvsqskdsdvyitdktvldmrsmdfksnsavawsnksdf
acanafnnsiipedtffpsp
- Chain 'E':
Sequence, based on SEQRES records: (download)
>1ogaE (E:)
mvdggitqspkylfrkegqnvtlsceqnlnhdamywyrqdpgqglrliyysqivndfqkg
diaegysvsrekkesfpltvtsaqknptafylcasssrssyeqyfgpgtrltvtedlknv
fppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqplkeq
palndsryslssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeaw
gradqdrgggcd
Sequence, based on observed residues (ATOM records): (download)
>1ogaE (E:)
gitqspkylfrkegqnvtlsceqnlnhdamywyrqdpgqglrliyysqivndfqkgdiae
gysvsrekkesfpltvtsaqknptafylcasssrssyeqyfgpgtrltvtedlknvfppe
vavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqplkeqpaln
dsryslssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgrad
q