SCOPe 2.05: Structural Classification of Proteins

PDB entry 1ofd

View 1ofd on RCSB PDB site
Description: glutamate synthase from synechocystis sp in complex with 2-oxoglutarate at 2.0 angstrom resolution
Class: oxidoreductase
Keywords: oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur, fd-gogat
Deposited on 2003-04-14, released 2003-06-11
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-31.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.194
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: ferredoxin-dependent glutamate synthase 2
Species: SYNECHOCYSTIS SP. [TaxId:1148]
Database cross-references and differences (RAF-indexed):
- Uniprot P55038 (0-End)
  - conflict (577)
  - conflict (580)
  - conflict (1506)
Domains in SCOPe 2.05: d1ofda1, d1ofda2, d1ofda3
Chain 'B':
Compound: ferredoxin-dependent glutamate synthase 2
Species: SYNECHOCYSTIS SP. [TaxId:1148]
Database cross-references and differences (RAF-indexed):
- Uniprot P55038 (0-End)
  - conflict (577)
  - conflict (580)
  - conflict (1506)
Domains in SCOPe 2.05: d1ofdb1, d1ofdb2, d1ofdb3
Heterogens: FMN, F3S, AKG, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1ofdA (A:)
cgvgfianlrgkpdhtlveqalkalgcmehrggcsadndsgdgagvmtaiprellaqwfn
trnlpmpdgdrlgvgmvflpqepsarevarayveevvrlekltvlgwrevpvnsdvlgiq
aknnqphieqilvtcpegcagdeldrrlyiarsiigkklaedfyvcsfscrtivykgmvr
siilgefyldlknpgytsnfavyhrrfstntmpkwplaqpmrllghngeintllgninwm
aarekelevsgwtkaelealtpivnqansdsynldsalellvrtgrspleaamilvpeay
knqpalkdypeisdfhdyysglqepwdgpallvfsdgkivgagldrnglrparycitkdd
yivlgseagvvdlpevdivekgrlapgqmiavdlaeqkilknyqikqqaaqkypygewik
iqrqtvasdsfaektlfndaqtvlqqqaafgytaedvemvvvpmasqgkeptfcmgddtp
lavlshkprllydyfkqrfaqvtnppidplrenlvmslamflgkrgnllepkaesartik
lrsplvnevelqaiktgqlqvaevstlydldgvnsledaltnlvktaiatvqagaeilvl
tdrpngailtenqsfippllavgavhhhliraglrlkaslivdtaqcwsthhfaclvgyg
asaicpylalesvrqwwldektqklmengrldridlptalknyrqsveaglfkilskmgi
sllasyhgaqifeaiglgaelveyafagttsrvggltiadvagevmvfhgmafpemakkl
enfgfvnyrpggeyhmnspemskslhkavaaykvggngnngeaydhyelyrqylkdrpvt
alrdlldfnadqpaisleevesvesivkrfctggmslgalsreahetlaiamnrlgaksn
sgeggedvvryltlddvdsegnsptlphlhglqngdtansaikqiasgrfgvtpeylmsg
kqleikmaqgakpgeggqlpgkkvseyiamlrrskpgvtlisppphhdiysiedlaqliy
dlhqinpeaqvsvklvaeigigtiaagvakanadiiqisghdggtgasplssikhagspw
elgvtevhrvlmenqlrdrvllradgglktgwdvvmaalmgaeeygfgsiamiaegcima
rvchtnncpvgvatqqerlrqrfkgvpgqvvnffyfiaeevrsllahlgyrslddiigrt
dllkvrsdvqlsktqnltldcllnlpdtkqnrqwlnhepvhsngpvldddiladpdiqea
inhqttatktyrlvntdrtvgtrlsgaiakkygnngfegnitlnfqgaagqsfgafnldg
mtlhlqgeandyvgkgmnggeivivphpqasfapednviigntclygatggnlyangrag
erfavrnsvgkaviegagdhcceymtggvivvlgpvgrnvgagmtgglayfldevgdlpe
kinpeiitlqritaskgeeqlkslitahvehtgspkgkailanwsdylgkfwqavppsek
dspeanndvsltgektltsv

Sequence, based on observed residues (ATOM records): (download)

>1ofdA (A:)
cgvgfianlrgkpdhtlveqalkalgcmehrggcsadndsgdgagvmtaiprellaqwfn
trnlpmpdgdrlgvgmvflpqepsarevarayveevvrlekltvlgwrevpvnsdvlgiq
aknnqphieqilvtcpegcagdeldrrlyiarsiigkklaedfyvcsfscrtivykgmvr
siilgefyldlknpgytsnfavyhrrfstntmpkwplaqpmrllghngeintllgninwm
aarekelevsgwtkaelealtpivnqansdsynldsalellvrtgrspleaamilvpeay
knqpalkdypeisdfhdyysglqepwdgpallvfsdgkivgagldrnglrparycitkdd
yivlgseagvvdlpevdivekgrlapgqmiavdlaeqkilknyqikqqaaqkypygewik
iqrqtvasdsfaektlfndaqtvlqqqaafgytaedvemvvvpmasqgkeptfcmgddtp
lavlshkprllydyfkqrfaqvtnppidplrenlvmslamflgkrgnllepkaesartik
lrsplvnevelqaiktgqlqvaevstlydldgvnsledaltnlvktaiatvqagaeilvl
tdrpngailtenqsfippllavgavhhhliraglrlkaslivdtaqcwsthhfaclvgyg
asaicpylalesvrqwwldektqklmengrldridlptalknyrqsveaglfkilskmgi
sllasyhgaqifeaiglgaelveyafagttsrvggltiadvagevmvfhgmafkklenfg
fvnyrpggeyhmnspemskslhkavaaydhyelyrqylkdrpvtalrdlldfnadqpais
leevesvesivkrfctggmslgalsreahetlaiamnrlgaksnsgeggedvvryltldd
vdsegnsptlphlhglqngdtansaikqiasgrfgvtpeylmsgkqleikmaqgakpgeg
gqlpgkkvseyiamlrrskpgvtlisppphhdiysiedlaqliydlhqinpeaqvsvklv
aeigigtiaagvakanadiiqisghdggtgasplssikhagspwelgvtevhrvlmenql
rdrvllradgglktgwdvvmaalmgaeeygfgsiamiaegcimarvchtnncpvgvatqq
erlrqrfkgvpgqvvnffyfiaeevrsllahlgyrslddiigrtdllkvrsdvqlsktqn
ltldcllnlpdtkqnrqwlnhepvhsngpvldddiladpdiqeainhqttatktyrlvnt
drtvgtrlsgaiakkygnngfegnitlnfqgaagqsfgafnldgmtlhlqgeandyvgkg
mnggeivivphpqasfapednviigntclygatggnlyangragerfavrnsvgkavieg
agdhcceymtggvivvlgpvgrnvgagmtgglayfldevgdlpekinpeiitlqritask
geeqlkslitahvehtgspkgkailanwsdylgkfwqavppsekdspeann

Chain 'B':
Sequence, based on SEQRES records: (download)

>1ofdB (B:)
cgvgfianlrgkpdhtlveqalkalgcmehrggcsadndsgdgagvmtaiprellaqwfn
trnlpmpdgdrlgvgmvflpqepsarevarayveevvrlekltvlgwrevpvnsdvlgiq
aknnqphieqilvtcpegcagdeldrrlyiarsiigkklaedfyvcsfscrtivykgmvr
siilgefyldlknpgytsnfavyhrrfstntmpkwplaqpmrllghngeintllgninwm
aarekelevsgwtkaelealtpivnqansdsynldsalellvrtgrspleaamilvpeay
knqpalkdypeisdfhdyysglqepwdgpallvfsdgkivgagldrnglrparycitkdd
yivlgseagvvdlpevdivekgrlapgqmiavdlaeqkilknyqikqqaaqkypygewik
iqrqtvasdsfaektlfndaqtvlqqqaafgytaedvemvvvpmasqgkeptfcmgddtp
lavlshkprllydyfkqrfaqvtnppidplrenlvmslamflgkrgnllepkaesartik
lrsplvnevelqaiktgqlqvaevstlydldgvnsledaltnlvktaiatvqagaeilvl
tdrpngailtenqsfippllavgavhhhliraglrlkaslivdtaqcwsthhfaclvgyg
asaicpylalesvrqwwldektqklmengrldridlptalknyrqsveaglfkilskmgi
sllasyhgaqifeaiglgaelveyafagttsrvggltiadvagevmvfhgmafpemakkl
enfgfvnyrpggeyhmnspemskslhkavaaykvggngnngeaydhyelyrqylkdrpvt
alrdlldfnadqpaisleevesvesivkrfctggmslgalsreahetlaiamnrlgaksn
sgeggedvvryltlddvdsegnsptlphlhglqngdtansaikqiasgrfgvtpeylmsg
kqleikmaqgakpgeggqlpgkkvseyiamlrrskpgvtlisppphhdiysiedlaqliy
dlhqinpeaqvsvklvaeigigtiaagvakanadiiqisghdggtgasplssikhagspw
elgvtevhrvlmenqlrdrvllradgglktgwdvvmaalmgaeeygfgsiamiaegcima
rvchtnncpvgvatqqerlrqrfkgvpgqvvnffyfiaeevrsllahlgyrslddiigrt
dllkvrsdvqlsktqnltldcllnlpdtkqnrqwlnhepvhsngpvldddiladpdiqea
inhqttatktyrlvntdrtvgtrlsgaiakkygnngfegnitlnfqgaagqsfgafnldg
mtlhlqgeandyvgkgmnggeivivphpqasfapednviigntclygatggnlyangrag
erfavrnsvgkaviegagdhcceymtggvivvlgpvgrnvgagmtgglayfldevgdlpe
kinpeiitlqritaskgeeqlkslitahvehtgspkgkailanwsdylgkfwqavppsek
dspeanndvsltgektltsv

Sequence, based on observed residues (ATOM records): (download)

>1ofdB (B:)
cgvgfianlrgkpdhtlveqalkalgcmehrggcsadndsgdgagvmtaiprellaqwfn
trnlpmpdgdrlgvgmvflpqepsarevarayveevvrlekltvlgwrevpvnsdvlgiq
aknnqphieqilvtcpegcagdeldrrlyiarsiigkklaedfyvcsfscrtivykgmvr
siilgefyldlknpgytsnfavyhrrfstntmpkwplaqpmrllghngeintllgninwm
aarekelevsgwtkaelealtpivnqansdsynldsalellvrtgrspleaamilvpeay
knqpalkdypeisdfhdyysglqepwdgpallvfsdgkivgagldrnglrparycitkdd
yivlgseagvvdlpevdivekgrlapgqmiavdlaeqkilknyqikqqaaqkypygewik
iqrqtvasdsfaektlfndaqtvlqqqaafgytaedvemvvvpmasqgkeptfcmgddtp
lavlshkprllydyfkqrfaqvtnppidplrenlvmslamflgkrgnllepkaesartik
lrsplvnevelqaiktgqlqvaevstlydldgvnsledaltnlvktaiatvqagaeilvl
tdrpngailtenqsfippllavgavhhhliraglrlkaslivdtaqcwsthhfaclvgyg
asaicpylalesvrqwwldektqklmengrldridlptalknyrqsveaglfkilskmgi
sllasyhgaqifeaiglgaelveyafagttsrvggltiadvagevmvfhgmafkklenfg
fvnyrpggeyhmnspemskslhkavaaydhyelyrqylkdrpvtalrdlldfnadqpais
leevesvesivkrfctggmslgalsreahetlaiamnrlgaksnsgeggedvvryltldd
vdsegnsptlphlhglqngdtansaikqiasgrfgvtpeylmsgkqleikmaqgakpgeg
gqlpgkkvseyiamlrrskpgvtlisppphhdiysiedlaqliydlhqinpeaqvsvklv
aeigigtiaagvakanadiiqisghdggtgasplssikhagspwelgvtevhrvlmenql
rdrvllradgglktgwdvvmaalmgaeeygfgsiamiaegcimarvchtnncpvgvatqq
erlrqrfkgvpgqvvnffyfiaeevrsllahlgyrslddiigrtdllkvrsdvqlsktqn
ltldcllnlpdtkqnrqwlnhepvhsngpvldddiladpdiqeainhqttatktyrlvnt
drtvgtrlsgaiakkygnngfegnitlnfqgaagqsfgafnldgmtlhlqgeandyvgkg
mnggeivivphpqasfapednviigntclygatggnlyangragerfavrnsvgkavieg
agdhcceymtggvivvlgpvgrnvgagmtgglayfldevgdlpekinpeiitlqritask
geeqlkslitahvehtgspkgkailanwsdylgkfwqavppsekdspeann