PDB entry 1odl

View 1odl on RCSB PDB site
Description: purine nucleoside phosphorylase from thermus thermophilus
Class: transferase
Keywords: nucleoside phosphorylase, alpha-beta protein, transferase, riken structural genomics/proteomics initiative, rsgi, structural genomics
Deposited on 2003-02-19, released 2003-02-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-08, with a file datestamp of 2019-05-03.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 1ODL (Start-234)
    Domains in SCOPe 2.08: d1odla_
  • Chain 'B':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 1ODL (Start-234)
    Domains in SCOPe 2.08: d1odlb_
  • Chain 'C':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 1ODL (Start-234)
    Domains in SCOPe 2.08: d1odlc_
  • Chain 'D':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 1ODL (Start-234)
    Domains in SCOPe 2.08: d1odld_
  • Chain 'E':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 1ODL (Start-234)
    Domains in SCOPe 2.08: d1odle_
  • Chain 'F':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 1ODL (Start-234)
    Domains in SCOPe 2.08: d1odlf_
  • Heterogens: SO4, GOL, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1odlA (A:)
mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

    Sequence, based on observed residues (ATOM records): (download) 
    >1odlA (A:)
spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1odlB (B:)
mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

    Sequence, based on observed residues (ATOM records): (download) 
    >1odlB (B:)
spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1odlC (C:)
mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

    Sequence, based on observed residues (ATOM records): (download) 
    >1odlC (C:)
spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1odlD (D:)
mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

    Sequence, based on observed residues (ATOM records): (download) 
    >1odlD (D:)
spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1odlE (E:)
mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

    Sequence, based on observed residues (ATOM records): (download) 
    >1odlE (E:)
spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1odlF (F:)
mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

    Sequence, based on observed residues (ATOM records): (download) 
    >1odlF (F:)
spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev