PDB entry 1odk

View 1odk on RCSB PDB site
Description: purine nucleoside phosphorylase from thermus thermophilus
Class: transferase
Keywords: NUCLEOSIDE PHOSPHORYLASE, ALPHA-BETA PROTEIN,TRANSFERASE, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics
Deposited on 2003-02-19, released 2003-02-27
The last revision prior to the SCOP 1.75 freeze date was dated 2003-02-27, with a file datestamp of 2007-07-20.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.18
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1odka_
  • Chain 'B':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1odkb_
  • Chain 'C':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1odkc_
  • Chain 'D':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1odkd_
  • Chain 'E':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1odke_
  • Chain 'F':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1odkf_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1odkA (A:)
    mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
    qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
    egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
    easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev
    

    Sequence, based on observed residues (ATOM records): (download)
    >1odkA (A:)
    spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
    ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
    grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
    asalfllgrmrgvrtgailavsnrippevlqegvrrmvevaleavlev
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1odkB (B:)
    mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
    qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
    egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
    easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev
    

    Sequence, based on observed residues (ATOM records): (download)
    >1odkB (B:)
    spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
    ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
    grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
    asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1odkC (C:)
    mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
    qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
    egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
    easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev
    

    Sequence, based on observed residues (ATOM records): (download)
    >1odkC (C:)
    spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
    ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
    grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
    asalfllgrmrgvrtgailavsnrippevlqegvrrmvevaleavlev
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1odkD (D:)
    mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
    qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
    egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
    easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev
    

    Sequence, based on observed residues (ATOM records): (download)
    >1odkD (D:)
    spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
    ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
    grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
    asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >1odkE (E:)
    mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
    qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
    egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
    easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev
    

    Sequence, based on observed residues (ATOM records): (download)
    >1odkE (E:)
    spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
    ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
    grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
    asalfllgrmrgvrtgailavsnrievlqegvrrmvevaleavlev
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >1odkF (F:)
    mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
    qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
    egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
    easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev
    

    Sequence, based on observed residues (ATOM records): (download)
    >1odkF (F:)
    spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
    ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
    grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
    asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev