PDB entry 1odj

View 1odj on RCSB PDB site
Description: purine nucleoside phosphorylase from thermus thermophilus
Class: transferase
Keywords: transferase, nucleoside phosphorylase, alpha-beta protein, guanosine, riken structural genomics/proteomics initiative, rsgi, structural genomics
Deposited on 2003-02-19, released 2003-03-04
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.221
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 1ODJ (Start-234)
    Domains in SCOPe 2.01: d1odja_
  • Chain 'B':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 1ODJ (Start-234)
    Domains in SCOPe 2.01: d1odjb_
  • Chain 'C':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 1ODJ (Start-234)
    Domains in SCOPe 2.01: d1odjc_
  • Chain 'D':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 1ODJ (Start-234)
    Domains in SCOPe 2.01: d1odjd_
  • Chain 'E':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 1ODJ (Start-234)
    Domains in SCOPe 2.01: d1odje_
  • Chain 'F':
    Compound: purine nucleoside phosphorylase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
    • PDB 1ODJ (Start-234)
    Domains in SCOPe 2.01: d1odjf_
  • Heterogens: SO4, GMP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1odjA (A:)
mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

    Sequence, based on observed residues (ATOM records): (download) 
    >1odjA (A:)
spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1odjB (B:)
mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

    Sequence, based on observed residues (ATOM records): (download) 
    >1odjB (B:)
spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1odjC (C:)
mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

    Sequence, based on observed residues (ATOM records): (download) 
    >1odjC (C:)
spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1odjD (D:)
mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

    Sequence, based on observed residues (ATOM records): (download) 
    >1odjD (D:)
spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1odjE (E:)
mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

    Sequence, based on observed residues (ATOM records): (download) 
    >1odjE (E:)
spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1odjF (F:)
mspihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsv
qttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyl
egrpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafem
easalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev

    Sequence, based on observed residues (ATOM records): (download) 
    >1odjF (F:)
spihvrahpgdvaervllpgdpgraewiaktflqnprryndhrglwgytglykgvpvsvq
ttgmgtpsaaivveelvrlgarvlvrvgtagaassdlapgelivaqgavpldgttrqyle
grpyapvpdpevfralwrraealgyphrvglvasedafyattpeearawarygvlafeme
asalfllgrmrgvrtgailavsnrigdpelappevlqegvrrmvevaleavlev