PDB entry 1oby
View 1oby on RCSB PDB site
Description: crystal structure of the complex of pdz2 of syntenin with a syndecan-4 peptide.
Class: cell adhesion
Keywords: cell adhesion, adhesion/complex, pdz domain, signal transduction, nuclear protein
Deposited on
2003-01-31, released
2003-07-11
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: 0.175
AEROSPACI score: 0.52
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Syntenin 1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 1OBY (Start-4)
- Uniprot O00560 (5-78)
Domains in SCOPe 2.04: d1obya_ - Chain 'B':
Compound: Syntenin 1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 1OBY
- Uniprot O00560 (5-78)
Domains in SCOPe 2.04: d1obyb_ - Chain 'P':
Compound: syndecan-4
Species: HOMO SAPIENS, synthetic [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'Q':
Compound: syndecan-4
Species: HOMO SAPIENS, synthetic [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Heterogens: SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1obyA (A:)
gamdprtitmhkdstghvgfifkngkitsivkdssaarnglltehniceingqnviglkd
sqiadilstsgtvvtitim
Sequence, based on observed residues (ATOM records): (download)
>1obyA (A:)
prtitmhkdstghvgfifkngkitsivkdssaarnglltehniceingqnviglkdsqia
dilstsgtvvtitim
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1obyB (B:)
gamdprtitmhkdstghvgfifkngkitsivkdssaarnglltehniceingqnviglkd
sqiadilstsgtvvtitim
Sequence, based on observed residues (ATOM records): (download)
>1obyB (B:)
rtitmhkdstghvgfifkngkitsivkdssaarnglltehniceingqnviglkdsqiad
ilstsgtvvtitim
- Chain 'P':
No sequence available.
- Chain 'Q':
No sequence available.