PDB entry 1o9r
View 1o9r on RCSB PDB site
Description: the x-ray crystal structure of agrobacterium tumefaciens dps, a member of the family that protect DNA without binding
Class: iron-binding protein
Keywords: iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein
Deposited on
2002-12-18, released
2003-05-29
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 1.45 Å
R-factor: 0.18
AEROSPACI score: 0.68
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: agrobacterium tumefaciens dps
Species: AGROBACTERIUM TUMEFACIENS [TaxId:358]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1o9ra_ - Chain 'B':
Compound: agrobacterium tumefaciens dps
Species: AGROBACTERIUM TUMEFACIENS [TaxId:358]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1o9rb_ - Chain 'C':
Compound: agrobacterium tumefaciens dps
Species: AGROBACTERIUM TUMEFACIENS [TaxId:358]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1o9rc_ - Chain 'D':
Compound: agrobacterium tumefaciens dps
Species: AGROBACTERIUM TUMEFACIENS [TaxId:358]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1o9rd_ - Chain 'E':
Compound: agrobacterium tumefaciens dps
Species: AGROBACTERIUM TUMEFACIENS [TaxId:358]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1o9re_ - Chain 'F':
Compound: agrobacterium tumefaciens dps
Species: AGROBACTERIUM TUMEFACIENS [TaxId:358]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1o9rf_ - Heterogens: FE, TRS, EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1o9rA (A:)
mkthktkndlpsnakstvigilneslasvidlalvtkqahwnlkgpqfiavhelldtfrt
qldnhgdtiaervvqlggtalgslqavssttklkayptdiykihdhldalierygevanm
irkaiddsdeagdpttadiftaasrdldkslwfleahvqeks
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1o9rB (B:)
mkthktkndlpsnakstvigilneslasvidlalvtkqahwnlkgpqfiavhelldtfrt
qldnhgdtiaervvqlggtalgslqavssttklkayptdiykihdhldalierygevanm
irkaiddsdeagdpttadiftaasrdldkslwfleahvqeks
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1o9rC (C:)
mkthktkndlpsnakstvigilneslasvidlalvtkqahwnlkgpqfiavhelldtfrt
qldnhgdtiaervvqlggtalgslqavssttklkayptdiykihdhldalierygevanm
irkaiddsdeagdpttadiftaasrdldkslwfleahvqeks
Sequence, based on observed residues (ATOM records): (download)
>1o9rC (C:)
hktkndlpsnakstvigilneslasvidlalvtkqahwnlkgpqfiavhelldtfrtqld
nhgdtiaervvqlggtalgslqavssttklkayptdiykihdhldalierygevanmirk
aiddsdeagdpttadiftaasrdldkslwfleahvqeks
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1o9rD (D:)
mkthktkndlpsnakstvigilneslasvidlalvtkqahwnlkgpqfiavhelldtfrt
qldnhgdtiaervvqlggtalgslqavssttklkayptdiykihdhldalierygevanm
irkaiddsdeagdpttadiftaasrdldkslwfleahvqeks
Sequence, based on observed residues (ATOM records): (download)
>1o9rD (D:)
thktkndlpsnakstvigilneslasvidlalvtkqahwnlkgpqfiavhelldtfrtql
dnhgdtiaervvqlggtalgslqavssttklkayptdiykihdhldalierygevanmir
kaiddsdeagdpttadiftaasrdldkslwfleahvqeks
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1o9rE (E:)
mkthktkndlpsnakstvigilneslasvidlalvtkqahwnlkgpqfiavhelldtfrt
qldnhgdtiaervvqlggtalgslqavssttklkayptdiykihdhldalierygevanm
irkaiddsdeagdpttadiftaasrdldkslwfleahvqeks
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>1o9rF (F:)
mkthktkndlpsnakstvigilneslasvidlalvtkqahwnlkgpqfiavhelldtfrt
qldnhgdtiaervvqlggtalgslqavssttklkayptdiykihdhldalierygevanm
irkaiddsdeagdpttadiftaasrdldkslwfleahvqeks