PDB entry 1o8c

View 1o8c on RCSB PDB site
Description: crystal structure of e. coli k-12 yhdh with bound nadph
Class: structural genomics, unknown function
Keywords: structural genomics, unknown function, possible nadph-dependent quinone oxidoreductase
Deposited on 2002-11-26, released 2004-05-21
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.173
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: yhdh
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 1O8C (Start-21)
    • Uniprot P26646 (22-344)
    Domains in SCOPe 2.07: d1o8ca3, d1o8ca4, d1o8ca5
  • Chain 'B':
    Compound: yhdh
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 1O8C (Start-21)
    • Uniprot P26646 (22-344)
    Domains in SCOPe 2.07: d1o8cb3, d1o8cb4, d1o8cb5
  • Chain 'C':
    Compound: yhdh
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 1O8C
    • Uniprot P26646 (22-344)
    Domains in SCOPe 2.07: d1o8cc1, d1o8cc3
  • Chain 'D':
    Compound: yhdh
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • PDB 1O8C (Start-21)
    • Uniprot P26646 (22-344)
    Domains in SCOPe 2.07: d1o8cd3, d1o8cd4, d1o8cd5
  • Heterogens: NDP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1o8cA (A:)
msyyhhhhhhlestslykkaglqallleqqdgktlasvqtldesrlpegdvtvdvhwssl
nykdalaitgkgkiirnfpmipgidfagtvrtsedprfhagqevlltgwgvgenhwggla
eqarvkgdwlvampqgldarkamiigtagftamlcvmaledagvrpqdgeivvtgasggv
gstavallhklgyqvvavsgrestheylkslgasrvlprdefaesrplekqvwagaidtv
gdkvlakvlaqmnyggcvaacglaggftlpttvmpfilrnvrlqgvdsvmtpperraqaw
qrlvadlpesfytqaakeislseapnfaeaiinnqiqgrtlvkvn

    Sequence, based on observed residues (ATOM records): (download) 
    >1o8cA (A:)
lqallleqqdgktlasvqtldesrlpegdvtvdvhwsslnykdalaitgkgkiirnfpmi
pgidfagtvrtsedprfhagqevlltgwgvgenhwgglaeqarvkgdwlvampqgldark
amiigtagftamlcvmaledagvrpqdgeivvtgasggvgstavallhklgyqvvavsgr
estheylkslgasrvlprdefaesrplekqvwagaidtvgdkvlakvlaqmnyggcvaac
glaggftlpttvmpfilrnvrlqgvdsvmtpperraqawqrlvadlpesfytqaakeisl
seapnfaeaiinnqiqgrtlvkvn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1o8cB (B:)
msyyhhhhhhlestslykkaglqallleqqdgktlasvqtldesrlpegdvtvdvhwssl
nykdalaitgkgkiirnfpmipgidfagtvrtsedprfhagqevlltgwgvgenhwggla
eqarvkgdwlvampqgldarkamiigtagftamlcvmaledagvrpqdgeivvtgasggv
gstavallhklgyqvvavsgrestheylkslgasrvlprdefaesrplekqvwagaidtv
gdkvlakvlaqmnyggcvaacglaggftlpttvmpfilrnvrlqgvdsvmtpperraqaw
qrlvadlpesfytqaakeislseapnfaeaiinnqiqgrtlvkvn

    Sequence, based on observed residues (ATOM records): (download) 
    >1o8cB (B:)
lqallleqqdgktlasvqtldesrlpegdvtvdvhwsslnykdalaitgkgkiirnfpmi
pgidfagtvrtsedprfhagqevlltgwgvgenhwgglaeqarvkgdwlvampqgldark
amiigtagftamlcvmaledagvrpqdgeivvtgasggvgstavallhklgyqvvavsgr
estheylkslgasrvlprdefaesrplekqvwagaidtvgdkvlakvlaqmnyggcvaac
glaggftlpttvmpfilrnvrlqgvdsvmtpperraqawqrlvadlpesfytqaakeisl
seapnfaeaiinnqiqgrtlvkvn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1o8cC (C:)
msyyhhhhhhlestslykkaglqallleqqdgktlasvqtldesrlpegdvtvdvhwssl
nykdalaitgkgkiirnfpmipgidfagtvrtsedprfhagqevlltgwgvgenhwggla
eqarvkgdwlvampqgldarkamiigtagftamlcvmaledagvrpqdgeivvtgasggv
gstavallhklgyqvvavsgrestheylkslgasrvlprdefaesrplekqvwagaidtv
gdkvlakvlaqmnyggcvaacglaggftlpttvmpfilrnvrlqgvdsvmtpperraqaw
qrlvadlpesfytqaakeislseapnfaeaiinnqiqgrtlvkvn

    Sequence, based on observed residues (ATOM records): (download) 
    >1o8cC (C:)
qallleqqdgktlasvqtldesrlpegdvtvdvhwsslnykdalaitgkgkiirnfpmip
gidfagtvrtsedprfhagqevlltgwgvgenhwgglaeqarvkgdwlvampqgldarka
miigtagftamlcvmaledagvrpqdgeivvtgasggvgstavallhklgyqvvavsgre
stheylkslgasrvlprdefaesrplekqvwagaidtvgdkvlakvlaqmnyggcvaacg
laggftlpttvmpfilrnvrlqgvdsvmtpperraqawqrlvadlpesfytqaakeisls
eapnfaeaiinnqiqgrtlvkvn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1o8cD (D:)
msyyhhhhhhlestslykkaglqallleqqdgktlasvqtldesrlpegdvtvdvhwssl
nykdalaitgkgkiirnfpmipgidfagtvrtsedprfhagqevlltgwgvgenhwggla
eqarvkgdwlvampqgldarkamiigtagftamlcvmaledagvrpqdgeivvtgasggv
gstavallhklgyqvvavsgrestheylkslgasrvlprdefaesrplekqvwagaidtv
gdkvlakvlaqmnyggcvaacglaggftlpttvmpfilrnvrlqgvdsvmtpperraqaw
qrlvadlpesfytqaakeislseapnfaeaiinnqiqgrtlvkvn

    Sequence, based on observed residues (ATOM records): (download) 
    >1o8cD (D:)
lqallleqqdgktlasvqtldesrlpegdvtvdvhwsslnykdalaitgkgkiirnfpmi
pgidfagtvrtsedprfhagqevlltgwgvgenhwgglaeqarvkgdwlvampqgldark
amiigtagftamlcvmaledagvrpqdgeivvtgasggvgstavallhklgyqvvavsgr
estheylkslgasrvlprdefaesrplekqvwagaidtvgdkvlakvlaqmnyggcvaac
glaggftlpttvmpfilrnvrlqgvdsvmtpperraqawqrlvadlpesfytqaakeisl
seapnfaeaiinnqiqgrtlvkvn