PDB entry 1o87

View 1o87 on RCSB PDB site
Description: a new mggdp complex of the ffh ng domain
Class: protein transport
Keywords: protein transport, ffh, signal recognition particle, srp, gtpase, GTP-binding, RNA-binding
Deposited on 2002-11-25, released 2004-01-02
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.197
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: signal recognition particle protein
    Species: Thermus aquaticus [TaxId:271]
    Database cross-references and differences (RAF-indexed):
    • PDB 1O87 (0-0)
    • Uniprot O07347 (1-End)
    Domains in SCOPe 2.01: d1o87a1, d1o87a2
  • Chain 'B':
    Compound: signal recognition particle protein
    Species: Thermus aquaticus [TaxId:271]
    Database cross-references and differences (RAF-indexed):
    • PDB 1O87 (0-0)
    • Uniprot O07347 (1-End)
    Domains in SCOPe 2.01: d1o87b1, d1o87b2
  • Heterogens: CL, FMT, GDP, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1o87A (A:)
mfqqlsarlqeaigrlrgrgriteedlkatlreirralmdadvnlevardfvervreeal
gkqvlesltpaevilatvyealkealggearlpvlkdrnlwflvglqgsgktttaaklal
yykgkgrrpllvaadtqrpaareqlrllgekvgvpvlevmdgespesirrrveekarlea
rdlilvdtagrlqideplmgelarlkevlgpdevllvldamtgqealsvarafdekvgvt
glvltkldgdarggaalsarhvtgkpiyfagvsekpeglepfyperlagrilgmgdv

    Sequence, based on observed residues (ATOM records): (download) 
    >1o87A (A:)
mfqqlsarlqeaigrlrgrgriteedlkatlreirralmdadvnlevardfvervreeal
gkqvlesltpaevilatvyealkealggearlpvlkdrnlwflvglqgsgktttaaklal
yykgkgrrpllvaadtqrpaareqlrllgekvgvpvlevmdgespesirrrveekarlea
rdlilvdtagrlqideplmgelarlkevlgpdevllvldamtgqealsvarafdekvgvt
glvltkldgdarggaalsarhvtgkpiyfagvsekpeglepfyperlagrilgmg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1o87B (B:)
mfqqlsarlqeaigrlrgrgriteedlkatlreirralmdadvnlevardfvervreeal
gkqvlesltpaevilatvyealkealggearlpvlkdrnlwflvglqgsgktttaaklal
yykgkgrrpllvaadtqrpaareqlrllgekvgvpvlevmdgespesirrrveekarlea
rdlilvdtagrlqideplmgelarlkevlgpdevllvldamtgqealsvarafdekvgvt
glvltkldgdarggaalsarhvtgkpiyfagvsekpeglepfyperlagrilgmgdv

    Sequence, based on observed residues (ATOM records): (download) 
    >1o87B (B:)
mfqqlsarlqeaigrlrgrgriteedlkatlreirralmdadvnlevardfvervreeal
gkqvlesltpaevilatvyealkealggearlpvlkdrnlwflvglqgsgktttaaklal
yykgkgrrpllvaadtqrpaareqlrllgekvgvpvlevmdgespesirrrveekarlea
rdlilvdtagrlqideplmgelarlkevlgpdevllvldamtgqealsvarafdekvgvt
glvltkldgdarggaalsarhvtgkpiyfagvsekpeglepfyperlagrilgmg