PDB entry 1nyr

View 1nyr on RCSB PDB site
Description: Structure of Staphylococcus aureus threonyl-tRNA synthetase complexed with ATP
Class: ligase
Keywords: threonyl-tRNA synthetase, ATP, threonine, LIGASE
Deposited on 2003-02-13, released 2003-10-28
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.239
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: threonyl-tRNA synthetase 1
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1nyra1, d1nyra2, d1nyra3, d1nyra4
  • Chain 'B':
    Compound: threonyl-tRNA synthetase 1
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1nyrb1, d1nyrb2, d1nyrb3, d1nyrb4
  • Heterogens: ZN, ATP, THR, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1nyrA (A:)
meqiniqfpdgnkkafdkgtttediaqsispglrkkavagkfngqlvdltkpletdgsie
ivtpgseealevlrhstahlmahaikrlygnvkfgvgpvieggfyydfdidqnissddfe
qiektmkqivnenmkierkvvsrdeakelfsndeyklelidaipedenvtlysqgdftdl
crgvhvpstakikefkllstagaywrgdsnnkmlqriygtaffdkkelkahlqmleerke
rdhrkigkelelftnsqlvgaglplwlpngatirreieryivdkevsmgydhvytpvlan
vdlyktsghwdhyqedmfppmqldetesmvlrpmncphhmmiyankphsyrelpiriael
gtmhryeasgavsglqrvrgmtlndshifvrpdqikeefkrvvnmiidvykdfgfedysf
rlsyrdpedkekyfddddmwnkaenmlkeaadelglsyeeaigeaafygpkldvqvktam
gkeetlstaqldfllperfdltyigqdgehhrpvvihrgvvstmerfvaflteetkgafp
twlapkqvqiipvnvdlhydyarqlqdelksqgvrvsiddrnekmgykireaqmqkipyq
ivvgdkevennqvnvrqygsqdqetvekdefiwnlvdeirlkkhr

    Sequence, based on observed residues (ATOM records): (download) 
    >1nyrA (A:)
iniqfpdgnkkafdkgtttediaqsispglrkkavagkfngqlvdltkpletdgsieivt
pgseealevlrhstahlmahaikrlygnvkfgvgpvieggfyydfdidqnissddfeqie
ktmkqivnenmkierkvvsrdeakelfsndeyklelidaipedenvtlysqgdftdlcrg
vhvpstakikefkllstagaywrgdsnnkmlqriygtaffdkkelkahlqmleerkerdh
rkigkelelftnsqlvgaglplwlpngatirreieryivdkevsmgydhvytpvlanvdl
yktsghwdhyqedmfppmqldetesmvlrpmncphhmmiyankphsyrelpiriaelgtm
hryeasgavsglqrvrgmtlndshifvrpdqikeefkrvvnmiidvykdfgfedysfrls
yrdpedkekyfddddmwnkaenmlkeaadelglsyeeaigeaafygpkldvqvktamgke
etlstaqldfllperfdltyigqdgehhrpvvihrgvvstmerfvaflteetkgafptwl
apkqvqiipvnvdlhydyarqlqdelksqgvrvsiddrnekmgykireaqmqkipyqivv
gdkevennqvnvrqygsqdqetvekdefiwnlvdeirlkkhr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1nyrB (B:)
meqiniqfpdgnkkafdkgtttediaqsispglrkkavagkfngqlvdltkpletdgsie
ivtpgseealevlrhstahlmahaikrlygnvkfgvgpvieggfyydfdidqnissddfe
qiektmkqivnenmkierkvvsrdeakelfsndeyklelidaipedenvtlysqgdftdl
crgvhvpstakikefkllstagaywrgdsnnkmlqriygtaffdkkelkahlqmleerke
rdhrkigkelelftnsqlvgaglplwlpngatirreieryivdkevsmgydhvytpvlan
vdlyktsghwdhyqedmfppmqldetesmvlrpmncphhmmiyankphsyrelpiriael
gtmhryeasgavsglqrvrgmtlndshifvrpdqikeefkrvvnmiidvykdfgfedysf
rlsyrdpedkekyfddddmwnkaenmlkeaadelglsyeeaigeaafygpkldvqvktam
gkeetlstaqldfllperfdltyigqdgehhrpvvihrgvvstmerfvaflteetkgafp
twlapkqvqiipvnvdlhydyarqlqdelksqgvrvsiddrnekmgykireaqmqkipyq
ivvgdkevennqvnvrqygsqdqetvekdefiwnlvdeirlkkhr

    Sequence, based on observed residues (ATOM records): (download) 
    >1nyrB (B:)
meqiniqfpdgnkkafdkgtttediaqsispglrkkavagkfngqlvdltkpletdgsie
ivtpgseealevlrhstahlmahaikrlygnvkfgvgpvieggfyydfdidqnissddfe
qiektmkqivnenmkierkvvsrdeakelelidaipedenvtlysqgdftdlcrgvhvps
takikefkllstagaywrgdsnnkmlqriygtaffdkkelkahlqmleerkerdhrkigk
elelftnsqlvgaglplwlpngatirreieryivdkevsmgydhvytpvlanvdlyktsg
hwdhyqedmfppmqldetesmvlrpmncphhmmiyankphsyrelpiriaelgtmhryea
sgavsglqrvrgmtlndshifvrpdqikeefkrvvnmiidvykdfgfedysfrlsyrdpe
dkekyfddddmwnkaenmlkeaadelglsyeeaigeaafygpkldvqvktamgkeetlst
aqldfllperfdltyigqdgehhrpvvihrgvvstmerfvaflteetkgafptwlapkqv
qiipvnvdlhydyarqlqdelksqgvrvsiddrnekmgykireaqmqkipyqivvgdkev
ennqvnvrqygsqdqetvekdefiwnlvdeirlkkhr