PDB entry 1nvp
View 1nvp on RCSB PDB site
Description: human tfiia/tbp/DNA complex
Class: transcription/DNA
Keywords: transcription regulation, DNA, complex, transcription/DNA complex
Deposited on
2003-02-04, released
2003-10-21
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.229
AEROSPACI score: 0.38
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: tata box binding protein
Species: Homo sapiens [TaxId:9606]
Gene: TBP OR TFIID OR TF2D
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1nvpa1, d1nvpa2 - Chain 'B':
Compound: Transcription initiation factor IIA alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: GTF2A1 OR TF2A1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1nvpb_ - Chain 'C':
Compound: Transcription initiation factor IIA beta chain
Species: Homo sapiens [TaxId:9606]
Gene: GTF2A1 OR TF2A1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1nvpc_ - Chain 'D':
Compound: Transcription initiation factor IIA gamma chain
Species: Homo sapiens [TaxId:9606]
Gene: GTF2A2 OR TF2A2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1nvpd1, d1nvpd2 - Chain 'E':
Compound: 5'-d(*gp*gp*gp*gp*gp*gp*gp*cp*tp*ap*tp*ap*ap*ap*ap*gp*g)-3'
- Chain 'F':
Compound: 5'-d(*cp*cp*tp*tp*tp*tp*ap*tp*ap*gp*cp*cp*cp*cp*cp*cp*c)-3'
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1nvpA (A:)
sgivpqlqnivstvnlgckldlktialrarnaeynpkrfaavimrireprttalifssgk
mvctgakseeqsrlaarkyarvvqklgfpakfldfkiqnmvgscdvkfpirleglvlthq
qfssyepelfpgliyrmikprivllifvsgkvvltgakvraeiyeafeniypilkgfrkt
t
Sequence, based on observed residues (ATOM records): (download)
>1nvpA (A:)
sgivpqlqnivstvnlgckldlktialrarnaeynpkrfaavimrireprttalifssgk
mvctgakseeqsrlaarkyarvvqklgfpakfldfkiqnmvgscdvkfpirleglvlthq
qfssyepelfpgliyrmikprivllifvsgkvvltgakvraeiyeafeniypilkgfrkt
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1nvpB (B:)
ansantntvpklyrsviedvindvrdiflddgvdeqvlmelktlwenklmqsravdg
Sequence, based on observed residues (ATOM records): (download)
>1nvpB (B:)
tvpklyrsviedvindvrdiflddgvdeqvlmelktlwenklm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1nvpC (C:)
gsgaedgqveeeplnseddvsdeegqelfdtenvvvcqydkihrsknkwkfhlkdgimnl
ngrdyifskaigdaew
Sequence, based on observed residues (ATOM records): (download)
>1nvpC (C:)
dtenvvvcqydkihrsknkwkfhlkdgimnlngrdyifskaigdaew
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1nvpD (D:)
ayqlyrnttlgnslqesldeliqsqqitpqlalqvllqfdkainaalaqrvrnrvnfrgs
lntyrfcdnvwtfvlndvefrevtelikvdkvkivacdgkntgsntte
Sequence, based on observed residues (ATOM records): (download)
>1nvpD (D:)
yqlyrnttlgnslqesldeliqsqqitpqlalqvllqfdkainaalaqrvrnrvnfrgsl
ntyrfcdnvwtfvlndvefrevtelikvdkvkivacd
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.