PDB entry 1nn8

View 1nn8 on RCSB PDB site
Description: CryoEM structure of poliovirus receptor bound to poliovirus
Class: Virus/Receptor
Keywords: icosahedral virus, picornavirus, Virus/Receptor COMPLEX
Deposited on 2003-01-13, released 2004-01-27
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-06.
Experiment type: EM
Resolution: 15 Å
R-factor: N/A
AEROSPACI score: -0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: coat protein vp1
    Species: Human poliovirus 1 Mahoney [TaxId:12081]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03300 (Start-301)
      • conflict (5-6)
      • conflict (8-9)
    Domains in SCOPe 2.05: d1nn81_
  • Chain '2':
    Compound: coat protein vp2
    Species: Human poliovirus 1 Mahoney [TaxId:12081]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1nn82_
  • Chain '3':
    Compound: coat protein vp3
    Species: Human poliovirus 1 Mahoney [TaxId:12081]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03300 (0-234)
      • conflict (122)
    Domains in SCOPe 2.05: d1nn83_
  • Chain '4':
    Compound: coat protein vp4
    Species: Human poliovirus 1 Mahoney [TaxId:12081]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1nn84_
  • Chain 'R':
    Compound: poliovirus receptor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1nn8r_
  • Chain 'S':
    Compound: poliovirus receptor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1nn8s_
  • Chain 'T':
    Compound: poliovirus receptor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1nn8t_
  • Heterogens: MYR

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >1nn81 (1:)
glgqmgssstdntvretvgaatsrdalpnteasgpthskeipaltavetgatnplvpsdt
vqtrhvvqhrsrsessiesffargacvtimtvdnpasttnkdklfavwkitykdtvqlrr
klefftysrfdmeltfvvtanftetnnghalnqvyqimyvppgapvpekwddytwqtssn
psifytygtaparisvpyvgisnayshfydgfskvplkdqsaalgdslygaaslndfgil
avrvvndhnptkvtskirvylkpkhirvwcprppravayygpgvdykdgtltplstkdlt
ty

    Sequence, based on observed residues (ATOM records): (download) 
    >1nn81 (1:)
gssstaatsrdalpnteasgpthskeipaltavetgatnplvpsdtvqtrhvvqhrsrse
ssiesffargacvtimtvdnpasttnkdklfavwkitykdtvqlrrklefftysrfdmel
tfvvtanftetnnghalnqvyqimyvppgapvpekwddytwqtssnpsifytygtapari
svpyvgisnayshfydgfskvplkdqsaalgdslygaaslndfgilavrvvndhnptkvt
skirvylkpkhirvwcprppravayygpgvdykdgtltplstkdltty

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >1nn82 (2:)
spnieacgysdrvlqltlgnstittqeaansvvaygrwpeylrdseanpvdqptepdvaa
crfytldtvswtkesrgwwwklpdalrdmglfgqnmyyhylgrsgytvhvqcnaskfhqg
algvfavpemclagdsntttmhtsyqnanpgekggtftgtftpdnnqtsparrfcpvdyl
lgngtllgnafvfphqiinlrtnncatlvlpyvnslsidsmvkhnnwgiailplaplnfa
sesspeipitltiapmccefnglrnitlprlq

    Sequence, based on observed residues (ATOM records): (download) 
    >1nn82 (2:)
eacgysdrvlqltlgnstittqeaansvvaygrwpeylrdseanpvdqptepdvaacrfy
tldtvswtkesrgwwwklpdalrdmglfgqnmyyhylgrsgytvhvqcnaskfhqgalgv
favpemclagdsntttmhtsyqnanpgekggtftgtftpdnnqtsparrfcpvdyllgng
tllgnafvfphqiinlrtnncatlvlpyvnslsidsmvkhnnwgiailplaplnfasess
peipitltiapmccefnglrnitlprlq

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1nn83 (3:)
glpvmntpgsnqyltadnfqspcalpefdvtppidipgevknmmelaeidtmipfdlsat
kkntmemyrvrlsdkphtddpilclslspasdprlshtmlgeilnyythwagslkftflf
cgsmmatgkllvsyappgadppkkrkeamlgthviwdiglqssctmvvpwisnttyrqti
ddsfteggyisvfyqtrivvplstpremdilgfvsacndfsvrllrdtthieqka

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >1nn84 (4:)
gaqvssqkvgahensnrayggstinyttinyyrdsasnaaskqdfsqdpskftepikdvl
iktapmln

    Sequence, based on observed residues (ATOM records): (download) 
    >1nn84 (4:)
gaqvssqkvgahensstinyttinyyrdsasnaaskqdfsqdpskftepikdvliktapm
ln

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >1nn8R (R:)
dvvvqaptqvpgflgdsvtlpcylqvpnmevthvsqltwarhgesgsmavfhqtqgpsys
eskrlefvaarlgaelrnaslrmfglrvedegnytclfvtfpqgsrsvdiwlrvlakpqn
taevqkvqltgepvpmarcvstggrppaqitwhsdlggmpntsqvpgflsgtvtvtslwi
lvpssqvdgknvtckvehesfekpqlltvnltvyyppevsisgydnnwylgqneatltcd
arsnpeptgynwsttmgplppfavaqgaqllirpvdkpinttlicnvtnalgarqaeltv
qv

    Sequence, based on observed residues (ATOM records): (download) 
    >1nn8R (R:)
vvvqaptqvpgflgdsvtlpcylqvpnmevthvsqltwarhgesgsmavfhqtqgpsyse
skrlefvaarlgaelrnaslrmfglrvedegnytclfvtfpqgsrsvdiwlrvlakpqnt
aevqkvqltgepvpmarcvstggrppaqitwhsdlggmpntsqvpgflsgtvtvtslwil
vpssqvdgknvtckvehesfekpqlltvnltvyyppevsisgydnnwylgqneatltcda
rsnpeptgynwsttmgplppfavaqgaqllirpvdkpinttlicnvtnalgarqaeltvq
v

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >1nn8S (S:)
dvvvqaptqvpgflgdsvtlpcylqvpnmevthvsqltwarhgesgsmavfhqtqgpsys
eskrlefvaarlgaelrnaslrmfglrvedegnytclfvtfpqgsrsvdiwlrvlakpqn
taevqkvqltgepvpmarcvstggrppaqitwhsdlggmpntsqvpgflsgtvtvtslwi
lvpssqvdgknvtckvehesfekpqlltvnltvyyppevsisgydnnwylgqneatltcd
arsnpeptgynwsttmgplppfavaqgaqllirpvdkpinttlicnvtnalgarqaeltv
qv

    Sequence, based on observed residues (ATOM records): (download) 
    >1nn8S (S:)
vvvqaptqvpgflgdsvtlpcylqvpnmevthvsqltwarhgesgsmavfhqtqgpsyse
skrlefvaarlgaelrnaslrmfglrvedegnytclfvtfpqgsrsvdiwlrvlakpqnt
aevqkvqltgepvpmarcvstggrppaqitwhsdlggmpntsqvpgflsgtvtvtslwil
vpssqvdgknvtckvehesfekpqlltvnltvyyppevsisgydnnwylgqneatltcda
rsnpeptgynwsttmgplppfavaqgaqllirpvdkpinttlicnvtnalgarqaeltvq
v

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >1nn8T (T:)
dvvvqaptqvpgflgdsvtlpcylqvpnmevthvsqltwarhgesgsmavfhqtqgpsys
eskrlefvaarlgaelrnaslrmfglrvedegnytclfvtfpqgsrsvdiwlrvlakpqn
taevqkvqltgepvpmarcvstggrppaqitwhsdlggmpntsqvpgflsgtvtvtslwi
lvpssqvdgknvtckvehesfekpqlltvnltvyyppevsisgydnnwylgqneatltcd
arsnpeptgynwsttmgplppfavaqgaqllirpvdkpinttlicnvtnalgarqaeltv
qv

    Sequence, based on observed residues (ATOM records): (download) 
    >1nn8T (T:)
vvvqaptqvpgflgdsvtlpcylqvpnmevthvsqltwarhgesgsmavfhqtqgpsyse
skrlefvaarlgaelrnaslrmfglrvedegnytclfvtfpqgsrsvdiwlrvlakpqnt
aevqkvqltgepvpmarcvstggrppaqitwhsdlggmpntsqvpgflsgtvtvtslwil
vpssqvdgknvtckvehesfekpqlltvnltvyyppevsisgydnnwylgqneatltcda
rsnpeptgynwsttmgplppfavaqgaqllirpvdkpinttlicnvtnalgarqaeltvq
v