PDB entry 1nlz

View 1nlz on RCSB PDB site
Description: Crystal structure of unliganded traffic ATPase of the type IV secretion system of helicobacter pylori
Class: hydrolase
Keywords: VirB11 ATPase, bacterial type IV secretion, HP0525, helicobacter pylori, HYDROLASE
Deposited on 2003-01-08, released 2003-05-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.239
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: virB11 homolog
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HPO525
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7BK04
      • modified residue (41)
      • modified residue (81)
      • modified residue (191)
      • modified residue (238)
      • modified residue (286)
      • modified residue (311)
    Domains in SCOPe 2.08: d1nlza_
  • Chain 'B':
    Compound: virB11 homolog
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HPO525
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7BK04
      • modified residue (41)
      • modified residue (81)
      • modified residue (191)
      • modified residue (238)
      • modified residue (286)
      • modified residue (311)
    Domains in SCOPe 2.08: d1nlzb_
  • Chain 'C':
    Compound: virB11 homolog
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HPO525
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7BK04 (Start-329)
      • modified residue (41)
      • modified residue (191)
      • modified residue (238)
      • modified residue (286)
      • modified residue (311)
    Domains in SCOPe 2.08: d1nlzc_
  • Chain 'D':
    Compound: virB11 homolog
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HPO525
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7BK04
      • modified residue (41)
      • modified residue (81)
      • modified residue (191)
      • modified residue (238)
      • modified residue (286)
      • modified residue (311)
    Domains in SCOPe 2.08: d1nlzd_
  • Chain 'E':
    Compound: virB11 homolog
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HPO525
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7BK04
      • modified residue (41)
      • modified residue (81)
      • modified residue (191)
      • modified residue (238)
      • modified residue (286)
      • modified residue (311)
    Domains in SCOPe 2.08: d1nlze_
  • Chain 'F':
    Compound: virB11 homolog
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: HPO525
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7BK04
      • modified residue (41)
      • modified residue (81)
      • modified residue (191)
      • modified residue (238)
      • modified residue (286)
      • modified residue (311)
    Domains in SCOPe 2.08: d1nlzf_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1nlzA (A:)
mtedrlsaedkkfleveralkeaalnplrhateelfgdflkmeniteicyngnkvvwvlk
nngewqpfdvrdrkafslsrlmhfarccasfkkktidnyenpilssnlangervqivlsp
vtvndetisisiripskttyphsffeeqgfynlldnkeqaisaikdgiaigknvivcggt
gsgkttyiksimefipkeeriisiedteeivfkhhknytqlffggnitsadclksclrmr
pdriilgelrsseaydfynvlcsghkgtlttlhagsseeafirlanmsssnsaarnikfe
sliegfkdlidmivhinhhkqcdefyikhr

    Sequence, based on observed residues (ATOM records): (download) 
    >1nlzA (A:)
lsaedkkfleveralkeaalnplrhateelfgdflkmeniteicyngnkvvwvlknngew
qpfdvrdrkafslsrlmhfarccasfkkktidnyenpilssnlangervqivlspvtvnd
etisisiripskttyphsffeeqgfynlldnkeqaisaikdgiaigknvivcggtgsgkt
tyiksimefipkeeriisiedteeivfkhhknytqlffggnitsadclksclrmrpdrii
lgelrsseaydfynvlcsghkgtlttlhagsseeafirlanmsssnsaarnikfeslieg
fkdlidmivhinhhkqcdefyik

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1nlzB (B:)
mtedrlsaedkkfleveralkeaalnplrhateelfgdflkmeniteicyngnkvvwvlk
nngewqpfdvrdrkafslsrlmhfarccasfkkktidnyenpilssnlangervqivlsp
vtvndetisisiripskttyphsffeeqgfynlldnkeqaisaikdgiaigknvivcggt
gsgkttyiksimefipkeeriisiedteeivfkhhknytqlffggnitsadclksclrmr
pdriilgelrsseaydfynvlcsghkgtlttlhagsseeafirlanmsssnsaarnikfe
sliegfkdlidmivhinhhkqcdefyikhr

    Sequence, based on observed residues (ATOM records): (download) 
    >1nlzB (B:)
eaalnplrhateelfgdflkmeniteicyngnkvvwvlknngewqpfdvrdrkafslsrl
mhfarccasfkkktidnyenpilssnlangervqivlspvtvndetisisiripskttyp
hsffeeqgfynlldnkeqaisaikdgiaigknvivcggtgsgkttyiksimefipkeeri
isiedteeivfkhhknytqlffggnitsadclksclrmrpdriilgelrsseaydfynvl
csghkgtlttlhagsseeafirlanmsssnsaarnikfesliegfkdlidmivhinhhkq
cdefyik

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1nlzC (C:)
mtedrlsaedkkfleveralkeaalnplrhateelfgdflkmeniteicyngnkvvwvlk
nngewqpfdvrdrkafslsrlmhfarccasfkkktidnyenpilssnlangervqivlsp
vtvndetisisiripskttyphsffeeqgfynlldnkeqaisaikdgiaigknvivcggt
gsgkttyiksimefipkeeriisiedteeivfkhhknytqlffggnitsadclksclrmr
pdriilgelrsseaydfynvlcsghkgtlttlhagsseeafirlanmsssnsaarnikfe
sliegfkdlidmivhinhhkqcdefyikhr

    Sequence, based on observed residues (ATOM records): (download) 
    >1nlzC (C:)
lrhateelfgdflkmeniteicyngnkvvwvlknngewqpfdvrdrkafnpilssnlang
ervqivlspvtvndetisisiripskttyphsffeeqgfynlldnkeqaisaikdgiaig
knvivcggtgsgkttyiksimefipkeeriisiedteeivfkhhknytqlffggnitsad
clksclrmrpdriilgelrsseaydfynvlcsghkgtlttlhagsseeafirlanmsssn
saarnikfesliegfkdlidmivhinhhkqcdefyikhr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1nlzD (D:)
mtedrlsaedkkfleveralkeaalnplrhateelfgdflkmeniteicyngnkvvwvlk
nngewqpfdvrdrkafslsrlmhfarccasfkkktidnyenpilssnlangervqivlsp
vtvndetisisiripskttyphsffeeqgfynlldnkeqaisaikdgiaigknvivcggt
gsgkttyiksimefipkeeriisiedteeivfkhhknytqlffggnitsadclksclrmr
pdriilgelrsseaydfynvlcsghkgtlttlhagsseeafirlanmsssnsaarnikfe
sliegfkdlidmivhinhhkqcdefyikhr

    Sequence, based on observed residues (ATOM records): (download) 
    >1nlzD (D:)
dkkfleveralkeaalnplrhateelfgdflkmeniteicyngnkvvwvlknngewqpfd
vrdrkafslsrlmhfarccasfkkktidnyenpilssnlangervqivlspvtvndetis
isiripskttyphsffeeqgfynlldnkeqaisaikdgiaigknvivcggtgsgkttyik
simefipkeeriisiedteeivfkhhknytqlffggnitsadclksclrmrpdriilgel
rsseaydfynvlcsghkgtlttlhagsseeafirlanmsssnsaarnikfesliegfkdl
idmivhinhhkqcdefyikh

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1nlzE (E:)
mtedrlsaedkkfleveralkeaalnplrhateelfgdflkmeniteicyngnkvvwvlk
nngewqpfdvrdrkafslsrlmhfarccasfkkktidnyenpilssnlangervqivlsp
vtvndetisisiripskttyphsffeeqgfynlldnkeqaisaikdgiaigknvivcggt
gsgkttyiksimefipkeeriisiedteeivfkhhknytqlffggnitsadclksclrmr
pdriilgelrsseaydfynvlcsghkgtlttlhagsseeafirlanmsssnsaarnikfe
sliegfkdlidmivhinhhkqcdefyikhr

    Sequence, based on observed residues (ATOM records): (download) 
    >1nlzE (E:)
alnplrhateelfgdflkmeniteicyngnkvvwvlknngewqpfdvrdrkafslsrlmh
farccasfkkktidnyenpilssnlangervqivlspvtvndetisisiripskttyphs
ffeeqgfynlldnkeqaisaikdgiaigknvivcggtgsgkttyiksimefipkeeriis
iedteeivfkhhknytqlffggnitsadclksclrmrpdriilgelrsseaydfynvlcs
ghkgtlttlhagsseeafirlanmsssnsaarnikfesliegfkdlidmivhinhhkqcd
efyik

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1nlzF (F:)
mtedrlsaedkkfleveralkeaalnplrhateelfgdflkmeniteicyngnkvvwvlk
nngewqpfdvrdrkafslsrlmhfarccasfkkktidnyenpilssnlangervqivlsp
vtvndetisisiripskttyphsffeeqgfynlldnkeqaisaikdgiaigknvivcggt
gsgkttyiksimefipkeeriisiedteeivfkhhknytqlffggnitsadclksclrmr
pdriilgelrsseaydfynvlcsghkgtlttlhagsseeafirlanmsssnsaarnikfe
sliegfkdlidmivhinhhkqcdefyikhr

    Sequence, based on observed residues (ATOM records): (download) 
    >1nlzF (F:)
alnplrhateelfgdflkmeniteicyngnkvvwvlknngewqpfdvrdrkafslsrlmh
farccasfkkktidnyenpilssnlangervqivlspvtvndetisisiripskttyphs
ffeeqgfynlldnkeqaisaikdgiaigknvivcggtgsgkttyiksimefipkeeriis
iedteeivfkhhknytqlffggnitsadclksclrmrpdriilgelrsseaydfynvlcs
ghkgtlttlhagsseeafirlanmsssnsaarnikfesliegfkdlidmivhinhhkqcd
efyik