PDB entry 1nly

View 1nly on RCSB PDB site
Description: Crystal structure of the traffic ATPase of the Helicobacter pylori type IV secretion system in complex with ATPgammaS
Class: hydrolase
Keywords: VIRB11 ATPase, bacterial type IV secretion, ATPgammaS, HP0525, Helicobacter pylori, HYDROLASE
Deposited on 2003-01-08, released 2003-05-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-03-07, with a file datestamp of 2012-03-02.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.243
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: virB11 homolog
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: hp0525
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7BK04
      • modified residue (41)
      • modified residue (81)
      • modified residue (191)
      • modified residue (238)
      • modified residue (286)
      • modified residue (311)
    Domains in SCOPe 2.08: d1nlya_
  • Chain 'B':
    Compound: virB11 homolog
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Gene: hp0525
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7BK04
      • modified residue (41)
      • modified residue (81)
      • modified residue (191)
      • modified residue (238)
      • modified residue (286)
      • modified residue (311)
    Domains in SCOPe 2.08: d1nlyb_
  • Heterogens: MG, AGS, SO4, 2PE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1nlyA (A:)
mtedrlsaedkkfleveralkeaalnplrhateelfgdflkmeniteicyngnkvvwvlk
nngewqpfdvrdrkafslsrlmhfarccasfkkktidnyenpilssnlangervqivlsp
vtvndetisisiripskttyphsffeeqgfynlldnkeqaisaikdgiaigknvivcggt
gsgkttyiksimefipkeeriisiedteeivfkhhknytqlffggnitsadclksclrmr
pdriilgelrsseaydfynvlcsghkgtlttlhagsseeafirlanmsssnsaarnikfe
sliegfkdlidmivhinhhkqcdefyikhr

    Sequence, based on observed residues (ATOM records): (download) 
    >1nlyA (A:)
lsaedkkfleveralkeaalnplrhateelfgdflkmeniteicyngnkvvwvlknngew
qpfdvrdrkafslsrlmhfarccasfkkktidnyenpilssnlangervqivlspvtvnd
etisisiripskttyphsffeeqgfynlldnkeqaisaikdgiaigknvivcggtgsgkt
tyiksimefipkeeriisiedteeivfkhhknytqlffggnitsadclksclrmrpdrii
lgelrsseaydfynvlcsghkgtlttlhagsseeafirlanmsssnsaarnikfeslieg
fkdlidmivhinhhkqcdefyik

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1nlyB (B:)
mtedrlsaedkkfleveralkeaalnplrhateelfgdflkmeniteicyngnkvvwvlk
nngewqpfdvrdrkafslsrlmhfarccasfkkktidnyenpilssnlangervqivlsp
vtvndetisisiripskttyphsffeeqgfynlldnkeqaisaikdgiaigknvivcggt
gsgkttyiksimefipkeeriisiedteeivfkhhknytqlffggnitsadclksclrmr
pdriilgelrsseaydfynvlcsghkgtlttlhagsseeafirlanmsssnsaarnikfe
sliegfkdlidmivhinhhkqcdefyikhr

    Sequence, based on observed residues (ATOM records): (download) 
    >1nlyB (B:)
lsaedkkfleveralkeaalnplrhateelfgdflkmeniteicyngnkvvwvlknngew
qpfdvrdrkafslsrlmhfarccasfkkktidnyenpilssnlangervqivlspvtvnd
etisisiripskttyphsffeeqgfynlldnkeqaisaikdgiaigknvivcggtgsgkt
tyiksimefipkeeriisiedteeivfkhhknytqlffggnitsadclksclrmrpdrii
lgelrsseaydfynvlcsghkgtlttlhagsseeafirlanmsssnsaarnikfeslieg
fkdlidmivhinhhkqcdefyik