PDB entry 1nld
View 1nld on RCSB PDB site
Description: fab fragment of a neutralizing antibody directed against an epitope of gp41 from hiv-1
Class: immunoglobulin
Keywords: fab fragment, immunoglobulin
Deposited on
1996-07-02, released
1996-12-23
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.198
AEROSPACI score: 0.25
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: fab1583
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1nldh1, d1nldh2 - Chain 'L':
Compound: fab1583
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- PIR PC4203 (0-218)
- conflict (2)
- conflict (9)
- conflict (11)
- conflict (13-14)
- conflict (16-17)
- conflict (23)
- conflict (26)
- conflict (26)
- conflict (26)
- conflict (32)
- conflict (34)
- conflict (38)
- conflict (40)
- conflict (43)
- conflict (50)
- conflict (54)
- conflict (57-59)
- conflict (67)
- conflict (93)
- conflict (96)
- conflict (98)
Domains in SCOPe 2.08: d1nldl1, d1nldl2
PDB Chain Sequences:
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>1nldH (H:)
qvklqqsgpglvqpsqslsitctvsgfsltcygvhwvrqspgkglewlgviwsggdtdyn
aafisrlsitkdnsksqvffkmnslqpndraiyycarrggdfwgqgttvtvssasttaps
vyplapvsgdqtnssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsss
vtvtsspwpsetitcnvahpasstkvdkkieprgc
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>1nldL (L:)
dvvmtqtpltlsvtigqpasisckssqslldsdgktylnwllqrpgqspkrliylvskld
sgvpdrftgsgsgtdftlkisrveaedlgvyycwqgthfprtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec