SCOPe 2.05: Structural Classification of Proteins

PDB entry 1nj8

View 1nj8 on RCSB PDB site
Description: Crystal Structure of Prolyl-tRNA Synthetase from Methanocaldococcus janaschii
Class: ligase
Keywords: Class-II tRNA synthetase, LIGASE
Deposited on 2002-12-30, released 2003-03-04
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-19.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.231
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Proline-tRNA Synthetase
Species: Methanocaldococcus jannaschii [TaxId:2190]
Gene: MJ1238
Database cross-references and differences (RAF-indexed):
- Uniprot Q58635 (4-458)
  - expression tag (3)
  - cloning artifact (4)
Domains in SCOPe 2.05: d1nj8a1, d1nj8a2, d1nj8a3
Chain 'B':
Compound: Proline-tRNA Synthetase
Species: Methanocaldococcus jannaschii [TaxId:2190]
Gene: MJ1238
Database cross-references and differences (RAF-indexed):
- Uniprot Q58635 (4-458)
  - expression tag (3)
  - cloning artifact (4)
Domains in SCOPe 2.05: d1nj8b1, d1nj8b2, d1nj8b3
Chain 'C':
Compound: Proline-tRNA Synthetase
Species: Methanocaldococcus jannaschii [TaxId:2190]
Gene: MJ1238
Database cross-references and differences (RAF-indexed):
- Uniprot Q58635 (4-458)
  - expression tag (3)
  - cloning artifact (4)
Domains in SCOPe 2.05: d1nj8c1, d1nj8c2, d1nj8c3
Chain 'D':
Compound: Proline-tRNA Synthetase
Species: Methanocaldococcus jannaschii [TaxId:2190]
Gene: MJ1238
Database cross-references and differences (RAF-indexed):
- Uniprot Q58635 (4-458)
  - expression tag (3)
  - cloning artifact (4)
Domains in SCOPe 2.05: d1nj8d1, d1nj8d2, d1nj8d3
Heterogens: HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1nj8A (A:)
gshmlefsewysdilekaeiydvrypikgcgvylpygfkirrytfeiirnlldesghdea
lfpmlipedllakeaehikgfedevywvthggktqldvklalrptsetpiyymmklwvkv
htdlpikiyqivntfryetkhtrplirlreimtfkeahtahstkeeaenqvkeaisiykk
ffdtlgipyliskrpewdkfpgaeytmafdtifpdgrtmqiatvhnlgqnfsktfeiife
tptgdkdyayqtcygisdrviasiiaihgdekglilppivapiqvvivplifkgkedivm
ekakeiyeklkgkfrvhiddrdirpgrkfndweikgvplrievgpkdienkkitlfrrdt
mekfqvdetqlmevvektlnnimeniknrawekfenfitiledinpdeiknilsekrgvi
lvpfkeeiyneeleekveatilgeteykgnkyiaiakty

Sequence, based on observed residues (ATOM records): (download)

>1nj8A (A:)
mlefsewysdilekaeiydvrypikgcgvylpygfkirrytfeiirnlldesghdealfp
mlipedllakeaehikgfedevywvthggktqldvklalrptsetpiyymmklwvkvhtd
lpikiyqivntfryetkhtrplirlreimtfkeahtahstkeeaenqvkeaisiykkffd
tlgipyliskrpewdkfpgaeytmafdtifpdgrtmqiatvhnlgqnfsktfeiifetpt
gdkdyayqtcygisdrviasiiaihgdekglilppivapiqvvivplifkgkedivmeka
keiyeklkgkfrvhiddrdirpgrkfndweikgvplrievgpkdienkkitlfrrdtmek
fqvdetqlmevvektlnnimeniknrawekfenfitiledinpdeiknilsekrgvilvp
fkeeiyneeleekveatilgeteykgnkyiaiakty

Chain 'B':
Sequence, based on SEQRES records: (download)

>1nj8B (B:)
gshmlefsewysdilekaeiydvrypikgcgvylpygfkirrytfeiirnlldesghdea
lfpmlipedllakeaehikgfedevywvthggktqldvklalrptsetpiyymmklwvkv
htdlpikiyqivntfryetkhtrplirlreimtfkeahtahstkeeaenqvkeaisiykk
ffdtlgipyliskrpewdkfpgaeytmafdtifpdgrtmqiatvhnlgqnfsktfeiife
tptgdkdyayqtcygisdrviasiiaihgdekglilppivapiqvvivplifkgkedivm
ekakeiyeklkgkfrvhiddrdirpgrkfndweikgvplrievgpkdienkkitlfrrdt
mekfqvdetqlmevvektlnnimeniknrawekfenfitiledinpdeiknilsekrgvi
lvpfkeeiyneeleekveatilgeteykgnkyiaiakty

Sequence, based on observed residues (ATOM records): (download)

>1nj8B (B:)
mlefsewysdilekaeiydvrypikgcgvylpygfkirrytfeiirnlldesghdealfp
mlipedllakeaehikgfedevywvthggktqldvklalrptsetpiyymmklwvkvhtd
lpikiyqivntfryetkhtrplirlreimtfkeahtahstkeeaenqvkeaisiykkffd
tlgipyliskrpewdkfpgaeytmafdtifpdgrtmqiatvhnlgqnfsktfeiifetpt
gdkdyayqtcygisdrviasiiaihgdekglilppivapiqvvivplifkgkedivmeka
keiyeklkgkfrvhiddrdirpgrkfndweikgvplrievgpkdienkkitlfrrdtmek
fqvdetqlmevvektlnnimeniknrawekfenfitiledinpdeiknilsekrgvilvp
fkeeiyneeleekveatilgeteykgnkyiaiakty

Chain 'C':
Sequence, based on SEQRES records: (download)

>1nj8C (C:)
gshmlefsewysdilekaeiydvrypikgcgvylpygfkirrytfeiirnlldesghdea
lfpmlipedllakeaehikgfedevywvthggktqldvklalrptsetpiyymmklwvkv
htdlpikiyqivntfryetkhtrplirlreimtfkeahtahstkeeaenqvkeaisiykk
ffdtlgipyliskrpewdkfpgaeytmafdtifpdgrtmqiatvhnlgqnfsktfeiife
tptgdkdyayqtcygisdrviasiiaihgdekglilppivapiqvvivplifkgkedivm
ekakeiyeklkgkfrvhiddrdirpgrkfndweikgvplrievgpkdienkkitlfrrdt
mekfqvdetqlmevvektlnnimeniknrawekfenfitiledinpdeiknilsekrgvi
lvpfkeeiyneeleekveatilgeteykgnkyiaiakty

Sequence, based on observed residues (ATOM records): (download)

>1nj8C (C:)
mlefsewysdilekaeiydvrypikgcgvylpygfkirrytfeiirnlldesghdealfp
mlipedllakeaehikgfedevywvthggktqldvklalrptsetpiyymmklwvkvhtd
lpikiyqivntfryetkhtrplirlreimtfkeahtahstkeeaenqvkeaisiykkffd
tlgipyliskrpewdkfpgaeytmafdtifpdgrtmqiatvhnlgqnfsktfeiifetpt
gdkdyayqtcygisdrviasiiaihgdekglilppivapiqvvivplifkgkedivmeka
keiyeklkgkfrvhiddrdirpgrkfndweikgvplrievgpkdienkkitlfrrdtmek
fqvdetqlmevvektlnnimeniknrawekfenfitiledinpdeiknilsekrgvilvp
fkeeiyneeleekveatilgeteykgnkyiaiakty

Chain 'D':
Sequence, based on SEQRES records: (download)

>1nj8D (D:)
gshmlefsewysdilekaeiydvrypikgcgvylpygfkirrytfeiirnlldesghdea
lfpmlipedllakeaehikgfedevywvthggktqldvklalrptsetpiyymmklwvkv
htdlpikiyqivntfryetkhtrplirlreimtfkeahtahstkeeaenqvkeaisiykk
ffdtlgipyliskrpewdkfpgaeytmafdtifpdgrtmqiatvhnlgqnfsktfeiife
tptgdkdyayqtcygisdrviasiiaihgdekglilppivapiqvvivplifkgkedivm
ekakeiyeklkgkfrvhiddrdirpgrkfndweikgvplrievgpkdienkkitlfrrdt
mekfqvdetqlmevvektlnnimeniknrawekfenfitiledinpdeiknilsekrgvi
lvpfkeeiyneeleekveatilgeteykgnkyiaiakty

Sequence, based on observed residues (ATOM records): (download)

>1nj8D (D:)
mlefsewysdilekaeiydvrypikgcgvylpygfkirrytfeiirnlldesghdealfp
mlipedllakeaehikgfedevywvthggktqldvklalrptsetpiyymmklwvkvhtd
lpikiyqivntfryetkhtrplirlreimtfkeahtahstkeeaenqvkeaisiykkffd
tlgipyliskrpewdkfpgaeytmafdtifpdgrtmqiatvhnlgqnfsktfeiifetpt
gdkdyayqtcygisdrviasiiaihgdekglilppivapiqvvivplifkgkedivmeka
keiyeklkgkfrvhiddrdirpgrkfndweikgvplrievgpkdienkkitlfrrdtmek
fqvdetqlmevvektlnnimeniknrawekfenfitiledinpdeiknilsekrgvilvp
fkeeiyneeleekveatilgeteykgnkyiaiakty