PDB entry 1nfd
View 1nfd on RCSB PDB site
Description: an alpha-beta t cell receptor (tcr) heterodimer in complex with an anti-tcr fab fragment derived from a mitogenic antibody
Class: complex (immunoreceptor/immunoglobulin)
Keywords: COMPLEX (IMMUNORECEPTOR-IMMUNOGLOBULIN), COMPLEX (IMMUNORECEPTOR-IMMUNOGLOBULIN) complex
Deposited on
1997-08-04, released
1998-01-28
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.243
AEROSPACI score: 0.14
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: n15 alpha-beta T-cell receptor
Species: Mus musculus [TaxId:10090]
Gene: N15 T-CELL RECEPTOR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1nfda1, d1nfda2 - Chain 'B':
Compound: n15 alpha-beta T-cell receptor
Species: Mus musculus [TaxId:10090]
Gene: N15 T-CELL RECEPTOR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1nfdb1, d1nfdb2 - Chain 'C':
Compound: n15 alpha-beta T-cell receptor
Species: Mus musculus [TaxId:10090]
Gene: N15 T-CELL RECEPTOR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1nfdc1, d1nfdc2 - Chain 'D':
Compound: n15 alpha-beta T-cell receptor
Species: Mus musculus [TaxId:10090]
Gene: N15 T-CELL RECEPTOR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1nfdd1, d1nfdd2 - Chain 'E':
Compound: h57 fab
Species: Mus musculus [TaxId:10090]
Gene: N15 T-CELL RECEPTOR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1nfde1, d1nfde2 - Chain 'F':
Compound: h57 fab
Species: Mus musculus [TaxId:10090]
Gene: N15 T-CELL RECEPTOR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1nfdf1, d1nfdf2 - Chain 'G':
Compound: h57 fab
Species: Mus musculus [TaxId:10090]
Gene: N15 T-CELL RECEPTOR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1nfdg1, d1nfdg2 - Chain 'H':
Compound: h57 fab
Species: Mus musculus [TaxId:10090]
Gene: N15 T-CELL RECEPTOR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1nfdh1, d1nfdh2 - Heterogens: NAG, NDG
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1nfdA (A:)
dsvtqteglvtvteglpvklnctyqttyltiaffwyvqylneapqvllksstdnkrtehq
gfhatlhkssssfhlqkssaqlsdsalyycalseggnykyvfgagtrlkviahiqnpepa
vyqlkdprsqdstlclftdfdsqinvpktmesgtfitdktvldmkamdsksngaiawsnq
tsftcqdifketnatypssdvpc
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1nfdB (B:)
dsgvvqsprhiikekggrsvltcipisghsnvvwyqqtlgkelkfliqhyekverdkgfl
psrfsvqqfddyhsemnmsaleledsamyfcasslrwgdeqyfgpgtrltvledlrnvtp
pkvslfepskaeiankqkatlvclargffpdhvelswwvngkevhsgvstdpqaykesny
syslssrlrvsatfwhnprnhfrcqvqfhglseedkwpegspkpvtqnisaeawgradc
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1nfdC (C:)
dsvtqteglvtvteglpvklnctyqttyltiaffwyvqylneapqvllksstdnkrtehq
gfhatlhkssssfhlqkssaqlsdsalyycalseggnykyvfgagtrlkviahiqnpepa
vyqlkdprsqdstlclftdfdsqinvpktmesgtfitdktvldmkamdsksngaiawsnq
tsftcqdifketnatypssdvpc
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1nfdD (D:)
dsgvvqsprhiikekggrsvltcipisghsnvvwyqqtlgkelkfliqhyekverdkgfl
psrfsvqqfddyhsemnmsaleledsamyfcasslrwgdeqyfgpgtrltvledlrnvtp
pkvslfepskaeiankqkatlvclargffpdhvelswwvngkevhsgvstdpqaykesny
syslssrlrvsatfwhnprnhfrcqvqfhglseedkwpegspkpvtqnisaeawgradc
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1nfdE (E:)
yeliqpssasvtvgetvkitcsgdqlpknfaywfqqksdknillliymdnkrpsgiperf
sgstsgttatltisgaqpedeaayyclssygdnndlvfgsgtqltvlrgpksspkvtvfp
pspeelrtnkatlvclvndfypgsatvtwkangatindgvkttkpskqgqnymtssylsl
tadqwkshnrvscqvthegetvekslspaecl
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>1nfdF (F:)
evylvesggdlvqpgsslkvscaasgftfsdfwmywvrqapgkglewvgriknipnnyat
eyadsvrgrftisrddsrnsiylqmnrlrvddtaiyyctragrfdhfdywgqgtmvtvss
atttapsvyplapacdsttsttdtvtlgclvkgyfpepvtvswnsgaltsgvhtfpsvlh
sglyslsssvtvpsstwpkqpitcnvahpasstkvdkkiepr
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>1nfdG (G:)
yeliqpssasvtvgetvkitcsgdqlpknfaywfqqksdknillliymdnkrpsgiperf
sgstsgttatltisgaqpedeaayyclssygdnndlvfgsgtqltvlrgpksspkvtvfp
pspeelrtnkatlvclvndfypgsatvtwkangatindgvkttkpskqgqnymtssylsl
tadqwkshnrvscqvthegetvekslspaecl
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>1nfdH (H:)
evylvesggdlvqpgsslkvscaasgftfsdfwmywvrqapgkglewvgriknipnnyat
eyadsvrgrftisrddsrnsiylqmnrlrvddtaiyyctragrfdhfdywgqgtmvtvss
atttapsvyplapacdsttsttdtvtlgclvkgyfpepvtvswnsgaltsgvhtfpsvlh
sglyslsssvtvpsstwpkqpitcnvahpasstkvdkkiepr