PDB entry 1nex
View 1nex on RCSB PDB site
Description: Crystal Structure of ScSkp1-ScCdc4-CPD peptide complex
Class: ligase, cell cycle
Keywords: WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, LIGASE, CELL CYCLE
Deposited on
2002-12-12, released
2003-02-18
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.239
AEROSPACI score: 0.25
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Centromere DNA-binding protein complex CBF3 subunit D
Species: Saccharomyces cerevisiae [TaxId:4932]
Gene: CBF3D OR SKP1 OR YDR328C OR D9798.14
Database cross-references and differences (RAF-indexed):
- Uniprot P52286
- modified residue (51)
- modified residue (104)
- modified residue (131)
Domains in SCOPe 2.08: d1nexa1, d1nexa2 - Chain 'B':
Compound: CDC4 protein
Species: Saccharomyces cerevisiae [TaxId:4932]
Database cross-references and differences (RAF-indexed):
- Uniprot P07834 (Start-463)
- modified residue (120)
- modified residue (142)
- modified residue (269)
- modified residue (299)
- modified residue (329)
- engineered (343)
- modified residue (344)
Domains in SCOPe 2.08: d1nexb1, d1nexb2 - Chain 'C':
Compound: Centromere DNA-binding protein complex CBF3 subunit D
Species: Saccharomyces cerevisiae [TaxId:4932]
Gene: CBF3D OR SKP1 OR YDR328C OR D9798.14
Database cross-references and differences (RAF-indexed):
- Uniprot P52286
- modified residue (51)
- modified residue (104)
- modified residue (131)
Domains in SCOPe 2.08: d1nexc1, d1nexc2 - Chain 'D':
Compound: CDC4 protein
Species: Saccharomyces cerevisiae [TaxId:4932]
Database cross-references and differences (RAF-indexed):
- Uniprot P07834 (Start-463)
- modified residue (120)
- modified residue (142)
- modified residue (269)
- modified residue (299)
- modified residue (329)
- engineered (343)
- modified residue (344)
Domains in SCOPe 2.08: d1nexd1, d1nexd2 - Chain 'E':
Compound: gll(tpo)ppqsg
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: gll(tpo)ppqsg
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1nexA (A:)
gahmvtsnvvlvsgegerftvdkkiaerslllknylndmgddddedddeivmpvpnvrss
vlqkviewaehhrdsnfpdeddddsrksapvdswdreflkvdqemlyeiilaanylnikp
lldagckvvaemirgrspeeirrtfnivndftpeeeaairrenewaedr
Sequence, based on observed residues (ATOM records): (download)
>1nexA (A:)
snvvlvsgegerftvdkkiaerslllknylivmpvpnvrssvlqkviewaehhrdsnfpv
dswdreflkvdqemlyeiilaanylnikplldagckvvaemirgrspeeirrtfnivndf
tpeeeaair
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1nexB (B:)
gagtlikdnlkrdlitslpfeislkifnylqfediinslgvsqnwnkiirkstslwkkll
isenfvspkgfnslnlklsqkypklsqqdrlrlsflenifilknwynpkfvpqrttlrgh
mtsvitclqfednyvitgaddkmirvydsinkkfllqlsghdggvwalkyahggilvsgs
tdrtvrvwdikkgccthvfeghnstvrcldiveyknikyivtgsrdntlhvwklpkessv
pdhgeehdyplvfhtpeenpyfvgvlrghmasvrtvsghgnivvsgsydntlivwdvaqm
kclyilsghtdriystiydherkrcisasmdttiriwdlengelmytlqghtalvgllrl
sdkflvsaaadgsirgwdandysrkfsyhhtnlsaittfyvsdnilvsgsenqfniynlr
sgklvhanilkdadqiwsvnfkgktlvaavekdgqsfleildfs
Sequence, based on observed residues (ATOM records): (download)
>1nexB (B:)
lkrdlitslpfeislkifnylqfediinslgvsqnwnkiirkstslwkkllisenfvspk
gfnslnlklsqkypklsqqdrlrlsflenifilknwynpkfvpqrttlrghmtsvitclq
fednyvitgaddkmirvydsinkkfllqlsghdggvwalkyahggilvsgstdrtvrvwd
ikkgccthvfeghnstvrcldiveyknikyivtgsrdntlhvwklpkdyplvfhtpeenp
yfvgvlrghmasvrtvsghgnivvsgsydntlivwdvaqmkclyilsghtdriystiydh
erkrcisasmdttiriwdlengelmytlqghtalvgllrlsdkflvsaaadgsirgwdan
dysrkfsyhhtnlsaittfyvsdnilvsgsenqfniynlrsgklvhanilkdadqiwsvn
fkgktlvaavekdgqsfleildfs
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1nexC (C:)
gahmvtsnvvlvsgegerftvdkkiaerslllknylndmgddddedddeivmpvpnvrss
vlqkviewaehhrdsnfpdeddddsrksapvdswdreflkvdqemlyeiilaanylnikp
lldagckvvaemirgrspeeirrtfnivndftpeeeaairrenewaedr
Sequence, based on observed residues (ATOM records): (download)
>1nexC (C:)
snvvlvsgegerftvdkkiaerslllknylivmpvpnvrssvlqkviewaehhrdsnfpv
dswdreflkvdqemlyeiilaanylnikplldagckvvaemirgrspeeirrtfnivndf
tpeeeaairr
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1nexD (D:)
gagtlikdnlkrdlitslpfeislkifnylqfediinslgvsqnwnkiirkstslwkkll
isenfvspkgfnslnlklsqkypklsqqdrlrlsflenifilknwynpkfvpqrttlrgh
mtsvitclqfednyvitgaddkmirvydsinkkfllqlsghdggvwalkyahggilvsgs
tdrtvrvwdikkgccthvfeghnstvrcldiveyknikyivtgsrdntlhvwklpkessv
pdhgeehdyplvfhtpeenpyfvgvlrghmasvrtvsghgnivvsgsydntlivwdvaqm
kclyilsghtdriystiydherkrcisasmdttiriwdlengelmytlqghtalvgllrl
sdkflvsaaadgsirgwdandysrkfsyhhtnlsaittfyvsdnilvsgsenqfniynlr
sgklvhanilkdadqiwsvnfkgktlvaavekdgqsfleildfs
Sequence, based on observed residues (ATOM records): (download)
>1nexD (D:)
lkrdlitslpfeislkifnylqfediinslgvsqnwnkiirkstslwkkllisenfvspk
gfnslnlklsqkypklsqqdrlrlsflenifilknwynpkfvpqrttlrghmtsvitclq
fednyvitgaddkmirvydsinkkfllqlsghdggvwalkyahggilvsgstdrtvrvwd
ikkgccthvfeghnstvrcldiveyknikyivtgsrdntlhvwklpkdyplvfhtpeenp
yfvgvlrghmasvrtvsghgnivvsgsydntlivwdvaqmkclyilsghtdriystiydh
erkrcisasmdttiriwdlengelmytlqghtalvgllrlsdkflvsaaadgsirgwdan
dysrkfsyhhtnlsaittfyvsdnilvsgsenqfniynlrsgklvhanilkdadqiwsvn
fkgktlvaavekdgqsfleildfs
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.