PDB entry 1ndm

View 1ndm on RCSB PDB site
Description: Crystal structure of Fab fragment of antibody HyHEL-26 complexed with lysozyme
Class: immune system/hydrolase
Keywords: antibody; lysozyme; mutant; HyHEL-26
Deposited on 2002-12-09, released 2003-06-03
The last revision prior to the SCOP 1.75 freeze date was dated 2003-06-03, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.208
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: antibody kappa light chain
    Species: MUS MUSCULUS
    Gene:
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01837 (0-213)
      • cloning artifact (0-1)
      • cloning artifact (3)
    Domains in SCOP 1.75: d1ndma1, d1ndma2
  • Chain 'B':
    Compound: immunoglobulin gamma 1 chain
    Species: MUS MUSCULUS
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1ndmb1, d1ndmb2
  • Chain 'C':
    Compound: Lysozyme C
    Species: GALLUS GALLUS
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1ndmc_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ndmA (A:)
    divltqspatlsvtpgdsvslscrasqsisnnlhwyqqkshesprllikyasqsisgips
    rfsgsgsgtdftlsinsvetedfgmyfcqqsnswpytfgggtkleikradaaptvsifpp
    sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
    ltkdeyerhnsytceathktstspivksfnrnec
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ndmB (B:)
    evqlqesgpslvkpsqtlsltcsvtgdsitsdywswirkfpgnkleymgyisysgstyyh
    pslksrisitrdtsknqyylqlnsvttedtatyycarwemdywgqgtsvtvssakttaps
    vyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsss
    vtvtsstwpsqsitcnvahpasstkvdkki
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1ndmC (C:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl