PDB entry 1nam
View 1nam on RCSB PDB site
Description: murine alloreactive scfv tcr-peptide-MHC class I molecule complex
Class: immune system
Keywords: T cell receptor, class I MHC, H-2Kb, TCR-pMHC complex, alloreactivity, crossreactivity, IMMUNE SYSTEM
Deposited on
2002-11-28, released
2003-03-11
The last revision prior to the SCOPe 2.02 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.237
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: BM3.3 T Cell Receptor alpha-Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1nama_ - Chain 'B':
Compound: BM3.3 T Cell Receptor beta-Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1namb_ - Chain 'H':
Compound: h-2 class I histocompatibility antigen, k-b alpha chain precursor
Species: Mus musculus [TaxId:10090]
Gene: H2-K
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1namh1, d1namh2 - Chain 'L':
Compound: Beta-2-microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1naml_ - Chain 'P':
Compound: Nucleocapsid
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1namA (A:)
qkvtqtqtsisvmekttvtmdcvyetqdssyflfwykqtasgeivflirqdsykkenatv
ghyslnfqkpkssigliitatqiedsavyfcamrgdyggsgnklifgtgtllsvkp
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1namB (B:)
vtlleqnprwrlvprgqavnlrcilknsqypwmswyqqdlqkqlqwlftlrspgdkevks
lpgadylatrvtdtelrlqvanmsqgrtlyctcsadrvgntlyfgegsrlivv
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>1namH (H:)
gphslryfvtavsrpglgeprymevgyvddtefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrwe
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>1namL (L:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm
- Chain 'P':
No sequence available.